PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000273251

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Dof

Protein Properties

Length: 311aa MW: 34083.9 Da PI: 7.1957

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000273251	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.4	8.6e-40	16	76	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprC+s+ntkfCyynny+lsqPr+fCk+C+ryWtkGGalrn+PvGgg+rkn k+s MDP0000273251 16 EQEQLKCPRCESSNTKFCYYNNYNLSQPRHFCKNCKRYWTKGGALRNIPVGGGSRKNTKKS 76 57899****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-26	6	68	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-33	18	74	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.18	20	74	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	22	58	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MQDPATFQPM KPQFPEQEQL KCPRCESSNT KFCYYNNYNL SQPRHFCKNC KRYWTKGGAL 60 RNIPVGGGSR KNTKKSSSSA SKRSSSSLSS SSAAAVQNPD PQPDRTRVCA PKVDQDRGVM 120 DISGSFSSLL ASNGQFGSLL EGLNPNGSGL KLMQMGDYGE NLDAAGNGLD SDPGLGLEGQ 180 GNGNPESYMG LQNGDSSTSS CWNGGNGWPD LAIYTPEDDD GAWEFVPQLE RNVFICWWDK 240 VHLDHLKPTS FKARRILSYR QVVAELPCST TESSSKSKKN KSLIESGPSC SKNDLKDKVL 300 KILELDRLDD E

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00199	DAP	Transfer from AT1G51700	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028964137.1	1e-157	dof zinc finger protein DOF3.1
TrEMBL	A0A498J2C5	1e-132	A0A498J2C5_MALDO; Uncharacterized protein
STRING	XP_008391304.1	1e-156	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6181	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	1e-37	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	MDP0000273251