PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000273563

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MYB_related

Protein Properties

Length: 130aa MW: 14622.3 Da PI: 10.5948

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000273563	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.6	3.2e-14	38	82	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT eE++++++a ++ + Wk+I +g +t q++s+ qky MDP0000273563 38 RESWTDEEHDKFLEALXRFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 82 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.46E-18	32	88	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.436	33	87	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.9E-8	36	88	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-18	36	85	IPR006447	Myb domain, plants
SMART	SM00717	1.1E-10	37	85	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-11	38	82	IPR001005	SANT/Myb domain
CDD	cd00167	2.46E-9	40	83	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MYSTXANSHQ SSMGMASTPS SDGSGKKVRK PYTITKSRES WTDEEHDKFL EALXRFDRDW 60 KKIEDFVGSK TVIQIRSHAQ KYFLKVQKSG TTAHVPPPRP KRKAAYPYPQ KASKNGSPLL 120 KIVALCLSIA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.2510	1e-117	bud\| cell culture\| flower\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:21474993, ECO:0000269\|PubMed:21483796, ECO:0000269\|PubMed:23638299}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:22902701, ECO:0000269\|PubMed:23638299}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB627311	0.0	AB627311.1 Malus x domestica mRNA, microsatellite: MEST187, clone: SAM01_15_D05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009342304.1	5e-72	PREDICTED: protein REVEILLE 8 isoform X3
Swissprot	Q8RWU3	6e-59	RVE8_ARATH; Protein REVEILLE 8
TrEMBL	A0A498K1L7	2e-75	A0A498K1L7_MALDO; Uncharacterized protein
STRING	XP_008345424.1	7e-73	(Malus domestica)
STRING	XP_008355644.1	2e-73	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2956	33	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09600.2	2e-48	MYB_related family protein

Link Out ? help Back to Top
Phytozome	MDP0000273563

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Fogelmark K,Troein C Rethinking transcriptional activation in the Arabidopsis circadian clock. PLoS Comput. Biol., 2014. 10(7): p. e1003705 [PMID:25033214] Xing H, et al. LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors. Plant Signal Behav, 2015. 10(3): p. e1010888 [PMID:25848708] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]