PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000274003
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 331aa    MW: 36192.1 Da    PI: 7.5696
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000274003genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.62.9e-10166237655
                    HHHHHHHHHHHHHHHHHHHCTSCC.C........................TTS-STCHHHHHHHHHHHHHHH CS
            HLH   6 nerErrRRdriNsafeeLrellPk.as.....................kapskKlsKaeiLekAveYIksLq 55 
                    +++Er RR +i +++ +L+el+P+ +                      k      + a++L +AveY+k Lq
  MDP0000274003 166 SIAERVRRTKISDRIRKLQELVPSmDKgpgflhilvllvekfskcpvsKRMLHQTNTADMLDEAVEYVKFLQ 237
                    689*********************888********************76666669****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.23160236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-11163190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.89E-8164241No hitNo description
Gene3DG3DSA:4.10.280.109.5E-13165242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-7166237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-8166242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-11218244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF134567.0E-5264329No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MQRAAGGSSG GEVSQGGGGL GRYSSAPATW LEALLEEDEV DPLKPTQCLT ELLADNTPCT  60
TVDPASYDAA AGYLSRQKSS PADFNGGGGG SGGYFAGFGI PADLDFVSSS SLSPNSPSSS  120
ANKRVREHRQ HHYSSDTHVK VEEGGLEDSV GCRVRAKRGC ATHPRSIAER VRRTKISDRI  180
RKLQELVPSM DKGPGFLHIL VLLVEKFSKC PVSKRMLHQT NTADMLDEAV EYVKFLQKQI  240
QHSDIEFWCV CCHRDEGGFR REIIKLGLVN ILVEDSQILI NLLGGEKPQS WRLLSRMKDM  300
WSLMVNVRVA HIRHALREAI IVADGLASLG H
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028963136.11e-113transcription factor bHLH80-like isoform X2
SwissprotQ9C8P86e-53BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A498J9I81e-110A0A498J9I8_MALDO; Uncharacterized protein
STRINGXP_009379411.11e-100(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.15e-41bHLH family protein