PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000274120
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 980aa    MW: 107707 Da    PI: 7.2416
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000274120genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS327.32.9e-1006169792374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     ++L+++Ae v +g+++ aq +Larl+++ sp g+p+qR+a+yf+eAL+  l+ + + +  + pp++ ++ + + ++ a+k+fsevsP+l+f ++t
  MDP0000274120 616 LDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLLMNNPAT--SPPPRTPTPFDIIFKMGAYKVFSEVSPLLQFVNFT 709
                    679**************************************************955554..57888899999************************ PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.. 189
                    +Nqa+lea++ ++++Hi+Dfdi+ G++W++++q+L  R+  +++pslRiT+++sp++++  el  + ++L++fA+e+gv+f+ +v+  ++l++   
  MDP0000274120 710 CNQALLEALSDADQIHIVDFDIGFGAHWASFMQELPIRNrgASAPSLRITAFASPSTHHPVELGLMXDNLTQFANEIGVSFDLEVVNIDSLDQNsy 805
                    ************************************99966779*****************************************98887776611 PP

           GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                    +l  +r + +Ea+aVn+ +   ++ +++++l++    vL++vk+lsPk+vv  ++ +d+++ +F +++l+al+ y  l++sl+a    +s++ +k+
  MDP0000274120 806 SLPIFRANDNEAVAVNFPI--WSTSNQPAALPN----VLRFVKQLSPKIVVSLDRGCDRSDLPFPQHILQALQSYINLLESLDAV-NVTSDAVNKI 894
                    444567777********99..666678999999....*********************************************665.579******* PP

           GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    Er+ll+++i++ v  + +       ++  W+  + +aGF+pvp+s+++++qa++++++ + +g++ve++++slvl+W++r+L+s+SaWr
  MDP0000274120 895 ERFLLQPKIESTVLGRLRT----PDKMPLWKTLFASAGFTPVPFSNFTETQAECVVKRNPARGFHVEKRQESLVLCWQRRELISASAWR 979
                    *************998887....9999*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.27589959IPR005202Transcription factor GRAS
PfamPF035141.0E-97616979IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 980 aa     Download sequence    Send to blast
MPVNASSNLI SWLSQLNAND EFELSDLSKA LRIWWQVWND KNNLVLCDCK ANHARVPMVA  60
DVVGKQYHLT NKNLRSIHTL NATHVHDSSQ TIKWRPPHAP KLKINFDGSV VVSTAAAGFV  120
IRDANSSPIV AGYPQSWRKY AKVKSCKDLC VXXYFKPIID XILNKCXTPX QLRTIIDDIR  180
GMPFQFQQGK GVIEIATASL PAIFTDSSCS KYKDGGFFNH HXHSFPTSEP NSVLHMRRSP  240
SPPTSASTLS SSFNNGGGGG DKLTPLAAET PPAVGQTSSK DEWACELQSI PSGGLEAVTG  300
SAGGGVERCD LGLGGLEDWE TMLSETTASP GHDQSLLRWI AGDVDDTSFG LKQLLQSGNN  360
HHRHHNSPLD FDGNAGLGVV DQGPNFDLIG NGGVSGPNFX FGGSGFGNGS NNGSNGKLGF  420
VPPGSGSFGL LNYKXSNVEL IHNNGGSNSV NCNIQNPIFS NSSNTLALPV SLPAVYGQQQ  480
LSPDEKPQIL NPQLFMSNQN QQPQVAQNPN FFMPLAYAQQ EQHHLLXSQP KRPNSGTNVD  540
PSTHQIQKGQ FSDAGQEFFM RKQQQQFGFA QGMQFLPQQH RIQQKPLIVP KQKVVLGNGE  600
EMAHHQQQQQ LQHTLLDQLY KAAELVGTGN FSHAQGILAR LNHQLSPVGK PLQRAAFYFK  660
EALQLLLLMN NPATSPPPRT PTPFDIIFKM GAYKVFSEVS PLLQFVNFTC NQALLEALSD  720
ADQIHIVDFD IGFGAHWASF MQELPIRNRG ASAPSLRITA FASPSTHHPV ELGLMXDNLT  780
QFANEIGVSF DLEVVNIDSL DQNSYSLPIF RANDNEAVAV NFPIWSTSNQ PAALPNVLRF  840
VKQLSPKIVV SLDRGCDRSD LPFPQHILQA LQSYINLLES LDAVNVTSDA VNKIERFLLQ  900
PKIESTVLGR LRTPDKMPLW KTLFASAGFT PVPFSNFTET QAECVVKRNP ARGFHVEKRQ  960
ESLVLCWQRR ELISASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-3263497922375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.121920.0bud| fruit| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009343059.10.0PREDICTED: scarecrow-like protein 22
TrEMBLA0A498JTP00.0A0A498JTP0_MALDO; Uncharacterized protein
STRINGXP_008367218.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132692130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-118GRAS family protein