PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000274864

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

GeBP

Protein Properties

Length: 432aa MW: 46858.3 Da PI: 4.4299

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000274864	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	116.8	1.2e-36	131	230	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk.spsd...didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 lfqrlw++eDei lLqG++d+++++g+ +++ d+ fy+++k +++++++k+qlveK+rrLKkK+++ v+k++sgke+sf+++hdq +fe+s+ MDP0000274864 131 LFQRLWTDEDEIELLQGFLDYTTQRGSrGSHQgpnDTALFYDQIKCKLQLDFNKNQLVEKLRRLKKKYRNVVTKIESGKEVSFKSPHDQATFEISR 226 79**********************984444456********************************************************* PP DUF573 94 kiWg 97 kiW MDP0000274864 227 KIWS 230 *6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.6E-34	132	230	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MAPDQDDAVL PEGDLSSSSS QDEEEDDDVV DEDEEEDDVD DDDDVINSAS PSTSSAGATD 60 SLPVAIATAT PTVTVALPAR APPTVPLTLA SAPTTVIAND AVLSSDPKRH PALSSQPEEK 120 KPAVLDDSRR LFQRLWTDED EIELLQGFLD YTTQRGSRGS HQGPNDTALF YDQIKCKLQL 180 DFNKNQLVEK LRRLKKKYRN VVTKIESGKE VSFKSPHDQA TFEISRKIWS NIGRIGAADD 240 NALDDEDPSP NPNNPNFNSY EIKAEEAAGF AGDKKSTPRS RKRSRIQPRA DEKPPPPPPL 300 RGGLVEPTPV IKDNNNGINX NNGGAGNNGS NCNAHGLIEE TVKSCLSPLF KELLSNAMGV 360 AGPSRGFGGL AFNPIPLSFG APLMNLXFGG GEVADDKWRK QQILELEVYS KRLDLVQNQI 420 KVALDELRSN GG

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MAPDQDDAVL PEGDLSSSSS QDEEEDDDVV DEDEEEDDVD DDDDVINSAS PSTSSAGATD  60
SLPVAIATAT PTVTVALPAR APPTVPLTLA SAPTTVIAND AVLSSDPKRH PALSSQPEEK  120
KPAVLDDSRR LFQRLWTDED EIELLQGFLD YTTQRGSRGS HQGPNDTALF YDQIKCKLQL  180
DFNKNQLVEK LRRLKKKYRN VVTKIESGKE VSFKSPHDQA TFEISRKIWS NIGRIGAADD  240
NALDDEDPSP NPNNPNFNSY EIKAEEAAGF AGDKKSTPRS RKRSRIQPRA DEKPPPPPPL  300
RGGLVEPTPV IKDNNNGINX NNGGAGNNGS NCNAHGLIEE TVKSCLSPLF KELLSNAMGV  360
AGPSRGFGGL AFNPIPLSFG APLMNLXFGG GEVADDKWRK QQILELEVYS KRLDLVQNQI  420
KVALDELRSN GG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.6368	0.0	bud\| fruit\| leaf\| root\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008370673.2	0.0	probable transcription factor At3g04930
Swissprot	F4K5T4	9e-92	STKLU_ARATH; Probable transcription factor At5g28040
TrEMBL	A0A498K6P2	0.0	A0A498K6P2_MALDO; Uncharacterized protein
STRING	XP_008370673.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3255	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	4e-59	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	MDP0000274864

Publications ? help Back to Top
García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]