PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000274989
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 538aa    MW: 60396.2 Da    PI: 5.7277
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000274989genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM51.14.6e-161878160
            NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyf 60
                   lp+G+rFhPt+eel+++yLk k++gk+  ++++i+e++i+++eP++Lp  ++ ++++ew+ 
  MDP0000274989 18 LPVGYRFHPTEEELISHYLKLKLRGKDSLVSDAIREINICNYEPRELPeISLIKSDDEWFL 78
                   799************************99999****************5455556789985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-17979IPR003441NAC domain
PROSITE profilePS5100514.23118171IPR003441NAC domain
PfamPF023654.7E-61978IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MASNGIRFTR VEVEGLLLPV GYRFHPTEEE LISHYLKLKL RGKDSLVSDA IREINICNYE  60
PRELPEISLI KSDDEWFLLI LLSIYDVQFA ALYEASCKPE AGGVLVVKLK SIRLLAKLAS  120
SRDFVLCYVK KKSGKNTDVA TGDEGESSNY NNAXDFENQL QPAXNMHVEE ERTQPPPNPD  180
IFQRELDLML GNTRGNNDYH GMDENLEEFV NGLFGDDPYQ GYSEEITHNN VFNDSTLPQS  240
PRKVYLXDCG VSSDSDTEVQ HQAAQGPSLQ MLGVPQASSS HFGREEGXML RNQTLXQAAS  300
SINVLPKPQT DRLQSISDED SGTHQITSRL RRASRPINAL KLKSASSVDV DAVSLQINSI  360
QLASDEYYNS ERTRRRTYPT SALLALGKPN ELEQQQSKAK VAAERRAAVD FPPKRNFITE  420
SNKDAEARQL RKASMAENDA FAFLKGDSHG DFITSSAFCE ALQXNRIWSS RASEDKESLN  480
GSREESKRGM QDSLVFNVKN AVLLYTPVRR RREYGPKIIL SLITLDSRLY FHQKGCGV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.106521e-150bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028961615.10.0NAC domain-containing protein 4-like
TrEMBLA0A498JJR81e-169A0A498JJR8_MALDO; Uncharacterized protein
STRINGXP_008347199.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13478522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.13e-17NAC domain containing protein 69