PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000275412
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 719aa    MW: 79658.6 Da    PI: 6.0519
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000275412genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.31.2e-2487169286
       trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    W ++e++ Li +rre++  ++++k++ +lW+++s++mre+gf rsp++C++kw+nl k++kk +++ k +   +s +++y+++l+
  MDP0000275412  87 WVQEETRSLIGFRREVDGLFNTSKSNRHLWDQISARMREKGFDRSPTMCTDKWRNLLKEFKKARHQVKVG--ARSAKMSYYEDLQ 169
                    *******************************************************************997..56678*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.35179143IPR017877Myb-like domain
SMARTSM007170.008183145IPR001005SANT/Myb domain
CDDcd122032.05E-2685150No hitNo description
PfamPF138379.2E-1886170No hitNo description
TIGRFAMsTIGR015341.5E-128405718IPR006424Glyceraldehyde-3-phosphate dehydrogenase, type I
Gene3DG3DSA:3.40.50.7203.0E-78405558IPR016040NAD(P)-binding domain
SuperFamilySSF517355.41E-62406566IPR016040NAD(P)-binding domain
SMARTSM008465.1E-84406550IPR020828Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain
PfamPF000442.2E-52406550IPR020828Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain
PRINTSPR000785.2E-48509522IPR020831Glyceraldehyde/Erythrose phosphate dehydrogenase family
PRINTSPR000785.2E-48544562IPR020831Glyceraldehyde/Erythrose phosphate dehydrogenase family
PROSITE patternPS000710548555IPR020830Glyceraldehyde 3-phosphate dehydrogenase, active site
SuperFamilySSF553472.53E-81549712No hitNo description
PfamPF028001.1E-72555712IPR020829Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
Gene3DG3DSA:3.30.360.103.3E-88559714No hitNo description
PRINTSPR000785.2E-48571587IPR020831Glyceraldehyde/Erythrose phosphate dehydrogenase family
PRINTSPR000785.2E-48628645IPR020831Glyceraldehyde/Erythrose phosphate dehydrogenase family
PRINTSPR000785.2E-48668683IPR020831Glyceraldehyde/Erythrose phosphate dehydrogenase family
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006006Biological Processglucose metabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0016620Molecular Functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0050661Molecular FunctionNADP binding
GO:0051287Molecular FunctionNAD binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MYLLEKPRAV DLYKGGGLDQ ETETEMMMDV AAVNGRAPPH HQNQNEREQQ QSSGGEGEEQ  60
ELCAAVSSRA GGGPGGAAGP KKRAETWVQE ETRSLIGFRR EVDGLFNTSK SNRHLWDQIS  120
ARMREKGFDR SPTMCTDKWR NLLKEFKKAR HQVKVGARSA KMSYYEDLQD LLRDRSTNSN  180
SATANSNHNS VSAAAAAVAT PPKLDSFVRF SDKGLEDSTI PFGPMEANDR SALNLERQLD  240
HDGGDPLAIT AADAVAVNGV PPWNWREGPE NGGEDHSSYC GRIITVKLGE YTRRIGIDGT  300
GEAIKEAIKS AFRIRTKRAF WLEDEDQVVR SLDRDMPLGN YTLHLDEGIT IKLCLYDDSD  360
RIVRTEEITL YTEDDFRDFL ARRGLMGLRE LSGYRRIDTL DDLHSGFGRI GRLVARVALQ  420
RDDIELVAVN DPFINIEYMS YMFKYDTVHG QWKHHELKVK DDKTLLFGDK PVKVFASRDP  480
EQIPWGEAGA EYVVESTGVF TDKEKASLHL KGGAKKVIIS APSKDAPMFV VGVNEKEYKP  540
DLDIVSNASC TTNCLAPLAK VIHDKFGIVE GLMTTVHSIT ATQKTVDGPS MKDWRGGRAA  600
ATNIIPSSTG AAKAVGKVLP ALNGKLTGMA FRVPTVDVSV VDLTVRLEKK ATYDEIKNAI  660
KKESEGSMKG ILGYTDEDVV STDFVGDNRS SIFDAKAGIA LNDNFVKLVS WYDNEWGYR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4z0h_O0.04057187320Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic
4z0h_R0.04057187320Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.156240.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008341347.10.0trihelix transcription factor GT-4-like
TrEMBLA0A4D9AJH10.0A0A4D9AJH1_SALSN; Glyceraldehyde 3-phosphate dehydrogenase
STRINGXP_008341347.10.0(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-134Trihelix family protein