PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000276060
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 96aa    MW: 10924.2 Da    PI: 9.4867
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000276060genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-09552247
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     g+WT+   +l+ +a + + ++   +W+  ar +g g++ +++k ++q++
    MDP0000276060  5 GSWTARQNKLFENALAVYDKDtpdRWHNLARAVG-GKSVEEVKRHYQML 52
                     89********************************.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.177256IPR017884SANT domain
SMARTSM007173.1E-8355IPR001005SANT/Myb domain
PfamPF002499.7E-7552IPR001005SANT/Myb domain
CDDcd001674.75E-7653No hitNo description
SuperFamilySSF466896.63E-13660IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-5659IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MASSGSWTAR QNKLFENALA VYDKDTPDRW HNLARAVGGK SVEEVKRHYQ MLVEDVSKIE  60
AGEVPLPNYR RSGGGSTKPY SRDIDQEDRM KSLRIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-31296693RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008388061.18e-67protein RADIALIS-like 3
SwissprotF4JVB82e-35RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A498HR462e-64A0A498HR46_MALDO; Uncharacterized protein
STRINGXP_008388061.13e-66(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.17e-38RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]