PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000276955

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 148aa MW: 16631.4 Da PI: 8.1363

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000276955	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	58.6	1.8e-18	6	56	1	51
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpe 51 +Ca C+++r+kC+ dC+lapyfp++ p +f n+hklFG+s+v+ ++ p+ MDP0000276955 6 SCAXCQHQRKKCTVDCPLAPYFPSSYPTNFHNAHKLFGVSRVVDSTNSSPP 56 6******************************************99888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.525	5	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-16	6	56	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MTNPQSCAXC QHQRKKCTVD CPLAPYFPSS YPTNFHNAHK LFGVSRVVDS TNSSPPSLPT 60 SEAPPCPPSX SSXPPRQRPC WRLPRRRPVA MAIAQTLEDF KDNVGXWNVY DHIQFHQVQK 120 KXSQEQEEQG NIGAGVPPQP QEEQANVF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009365511.1	1e-44	PREDICTED: LOB domain-containing protein 25-like
TrEMBL	A0A498JBD9	6e-97	A0A498JBD9_MALDO; Uncharacterized protein
STRING	XP_009365511.1	5e-44	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF22907	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	2e-14	LOB domain-containing protein 27

Link Out ? help Back to Top
Phytozome	MDP0000276955