PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000276982

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 999aa MW: 113157 Da PI: 6.2998

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000276982	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.1	2.8e-56	311	438	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelv +yLk+k++g+k+el evi+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v s MDP0000276982 311 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EVIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVNS 405 79**************************.99***********6434555777********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kktLv+y+grap+g +t+Wvmheyrl MDP0000276982 406 -QTRAVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 438 .9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13713	4.1E-8	84	115	IPR027988	Transcription factor BREVIS RADIX, N-terminal domain
PROSITE profile	PS51514	15.187	167	222	IPR013591	Brevis radix (BRX) domain
Pfam	PF08381	1.4E-14	168	209	IPR013591	Brevis radix (BRX) domain
SuperFamily	SSF101941	1.57E-64	304	463	IPR003441	NAC domain
PROSITE profile	PS51005	61.727	311	463	IPR003441	NAC domain
Pfam	PF02365	7.8E-30	312	438	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 999 aa Download sequence Send to blast
MGEWGXERGE AMCVGEVREG GXESTMSGAT NAEKCISTSD EMLIEEIQRL TVEAHNLERK 60 CKIGSQKIHE CEQKTEETWS LARDEAATCK AAKEVIKALA LRLKTISEKA SAGKQPNNGI 120 DTKLPQLTPL NTNTKLPEVD SVSDSPAVLS DTPKSEPHGR ETKSAKLEWV EQFEPGVHLT 180 LVVLPNGQKG LKRVNFXRKK FTDKDVERWL EGSIFQYVVG PVNLGAKPWT LVIVGIFFLG 240 PRPSCCTTIT RHLMWDNSQH FLFRCGTTLN TFMINVTQGV VVXFLIFIDG ICHPREEXEE 300 GPSVYMAPVS LPPGFRFHPT DEELVAYYLK RKINGRKIEL EVIPEVDLYK CEPWDLPGKS 360 LLPSKDLEWY FFSPRDRKYP NGSRTNRATK AGYWKATGKD RKVNSQTRAV GMKKTLVYYR 420 GRAPHGIRTN WVMHEYRLDE RECETAQGLQ VQDAYALCRI FKKTATGPKI GEHYGGTSTT 480 NYQLTSDHSS SVNELYSDGG RCEDFESSSY PMQMHNACSS SPNFVHKNSL DDMGRKRDGK 540 WTQFLSKKAF NCSSSFSPFP NHENISYPPS KVDIALECAR LQHRLSPPPL EVEDFPQVGL 600 NDFKTMQYSN PALDTTSTET DALQEILSVA HVSQEMVNQS SNHVDQTWGG NYAPPANDFS 660 FMVDRDAHYN QITDHLNSMR YVDQKTWGNS YTRSIEIGDL KDDFRMENTA ENLRWIGMSD 720 KDLEKSFTEE HKIIPIENIS SFRREEEEQH YEAQGGPGHR SGIIKELNDN EANDDDFSLS 780 FINEDPNENF LHDGNMDDYS TSPSFEVIEE VQVNHGMFVS TRQVAETFFH QLVPSQTVKV 840 HLNPVFGQNL LVERVVTQTK SKDRGSFFER FKELVMEKFD GIAKSTKPWR KIASTLVCAV 900 TLILMHMIIY LGQHMEDEKX MDAFTTTTTA TIVEEKGNSN ISKKEGLGLI KWSNKKEKVC 960 LVNIRDGSTC SVFLKKMGIF LTVSLALGTM WVNHNVIPS

Sequence ? help Back to Top

Protein Sequence Length: 999 aa Download sequence Send to blast

MGEWGXERGE AMCVGEVREG GXESTMSGAT NAEKCISTSD EMLIEEIQRL TVEAHNLERK  60
CKIGSQKIHE CEQKTEETWS LARDEAATCK AAKEVIKALA LRLKTISEKA SAGKQPNNGI  120
DTKLPQLTPL NTNTKLPEVD SVSDSPAVLS DTPKSEPHGR ETKSAKLEWV EQFEPGVHLT  180
LVVLPNGQKG LKRVNFXRKK FTDKDVERWL EGSIFQYVVG PVNLGAKPWT LVIVGIFFLG  240
PRPSCCTTIT RHLMWDNSQH FLFRCGTTLN TFMINVTQGV VVXFLIFIDG ICHPREEXEE  300
GPSVYMAPVS LPPGFRFHPT DEELVAYYLK RKINGRKIEL EVIPEVDLYK CEPWDLPGKS  360
LLPSKDLEWY FFSPRDRKYP NGSRTNRATK AGYWKATGKD RKVNSQTRAV GMKKTLVYYR  420
GRAPHGIRTN WVMHEYRLDE RECETAQGLQ VQDAYALCRI FKKTATGPKI GEHYGGTSTT  480
NYQLTSDHSS SVNELYSDGG RCEDFESSSY PMQMHNACSS SPNFVHKNSL DDMGRKRDGK  540
WTQFLSKKAF NCSSSFSPFP NHENISYPPS KVDIALECAR LQHRLSPPPL EVEDFPQVGL  600
NDFKTMQYSN PALDTTSTET DALQEILSVA HVSQEMVNQS SNHVDQTWGG NYAPPANDFS  660
FMVDRDAHYN QITDHLNSMR YVDQKTWGNS YTRSIEIGDL KDDFRMENTA ENLRWIGMSD  720
KDLEKSFTEE HKIIPIENIS SFRREEEEQH YEAQGGPGHR SGIIKELNDN EANDDDFSLS  780
FINEDPNENF LHDGNMDDYS TSPSFEVIEE VQVNHGMFVS TRQVAETFFH QLVPSQTVKV  840
HLNPVFGQNL LVERVVTQTK SKDRGSFFER FKELVMEKFD GIAKSTKPWR KIASTLVCAV  900
TLILMHMIIY LGQHMEDEKX MDAFTTTTTA TIVEEKGNSN ISKKEGLGLI KWSNKKEKVC  960
LVNIRDGSTC SVFLKKMGIF LTVSLALGTM WVNHNVIPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-55	307	463	11	168	Stress-induced transcription factor NAC1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008381390.2	0.0	NAC domain-containing protein 45 isoform X1
Refseq	XP_017189697.2	0.0	NAC domain-containing protein 45 isoform X1
TrEMBL	A0A498JA37	0.0	A0A498JA37_MALDO; Uncharacterized protein
STRING	XP_008381390.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4421	34	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-162	NAC domain containing protein 28

Link Out ? help Back to Top
Phytozome	MDP0000276982