PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000277477
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ZF-HD
Protein Properties Length: 219aa    MW: 24178 Da    PI: 9.9458
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000277477genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer61.12.3e-1940801558
    ZF-HD_dimer 15 aslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                   aslG++a+DGCgEf+ +   ++++ +l+C ACgCHRnFHRr + 
  MDP0000277477 40 ASLGSYATDGCGEFTLD---HASPGGLQCVACGCHRNFHRRVTY 80
                   89**************8...5689*****************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152313.7293178IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.4E-153979IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.4E-154077IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-104077IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.34E-15129199IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-28132200IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-28142200IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MTEDRKTQMR KAENGEPKGE VKQMSRRRER KDAGRVDWMA SLGSYATDGC GEFTLDHASP  60
GGLQCVACGC HRNFHRRVTY AATSSQAAGG GRSGHQQHHV IMSCSSRGRD PAENIITQDQ  120
LIDYNAGGGG SPDSGERMSS GKKRFRTKFT AEQKEKMLAF AEKLGWKLLR KDLEDEIERF  180
CKSVGVSRQV FKVWMHNHKN LSSSSTSAST GNASSLTTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-221432051879ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.131050.0bud| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393463.11e-132zinc-finger homeodomain protein 9-like
TrEMBLA0A314UWY93e-92A0A314UWY9_PRUYE; Zinc-finger homeodomain protein 11
STRINGXP_008393463.11e-132(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79822844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.15e-34homeobox protein 22