PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000277582

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

M-type_MADS

Protein Properties

Length: 245aa MW: 27680.8 Da PI: 11.1335

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000277582	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	57.7	1.5e-18	16	59	8	51
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr g lKKA ELS+L + e+ viifs+tgkl+++ss MDP0000277582 16 ARQVTFSKRRRGDLKKAGELSILSESEAVVIIFSQTGKLFDFSS 59 59****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	3.92E-18	1	62	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.422	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.0E-26	1	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.3E-15	16	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-18	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-18	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MMREKIKIRK IDYLPARQVT FSKRRRGDLK KAGELSILSE SEAVVIIFSQ TGKLFDFSSS 60 RYGFYGRRLE GSTLIFMFKS RKHGMLRIDL KQLPRRLKRL PPASRLRLGA VPPGRLPYSA 120 LLSSNRNIEV TISSVYDSIH VLPLARLPAT TFNPSTXTQS TTVAAGCSHL GMGNGYDGWE 180 FYYHGRREGG RSDNNKVKVS GLNWTVVVKE FIRSFWGRVE DSVKIPPFAR KVAARENGLA 240 DCKFA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.14615	1e-63	fruit\| leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB504716	8e-71	AB504716.1 Pyrus pyrifolia var. culta PpMADS13-1 mRNA for dormancy-associated MADS-box transcription factor, complete cds.
GenBank	KP164026	8e-71	KP164026.1 Pyrus pyrifolia clone PpDAM2 DAM2-like MADS-box protein mRNA, complete cds.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24540.1	1e-21	AGAMOUS-like 24

Link Out ? help Back to Top
Phytozome	MDP0000277582