PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000277813

Common Name

MYBR1

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

MYB_related

Protein Properties

Length: 283aa MW: 32613.3 Da PI: 6.0592

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000277813	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.3	3.6e-13	116	160	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++G+g+W+ I+r ++t+ q+ s+ qky MDP0000277813 116 PWTQEEHRRFLMGLLKYGKGDWRNISRNYVVTKTPTQVASHAQKY 160 7***************************9***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	5.731	10	64	IPR017884	SANT domain
SMART	SM00717	4.3E-7	11	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.3E-9	13	68	IPR009057	Homeodomain-like
CDD	cd00167	1.17E-5	14	60	No hit	No description
PROSITE profile	PS51294	17.128	109	165	IPR017930	Myb domain
SuperFamily	SSF46689	7.9E-16	111	165	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-9	113	163	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	6.3E-17	113	164	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	6.7E-10	114	160	IPR009057	Homeodomain-like
CDD	cd00167	6.86E-9	116	161	No hit	No description
Pfam	PF00249	1.6E-10	116	160	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
METLYFFQES QGSEWTKEEN KMFESALAMF DEKSPDRFLR VAEMIPGKTV IDVIKQYQEL 60 EEDVCEIESG RFPIPPGYPQ AYFRLELGDD RDFDANRKRP LAAARGSEQE RRKGIPWTQE 120 EHRRFLMGLL KYGKGDWRNI SRNYVVTKTP TQVASHAQKY FMRQHSGGKD KRRPSIHDIT 180 TVNLTSDAQS ETNRPPSDQF LPEQKSTESL NELLDWNAAD DEGAAMGFES THGNLFDPSP 240 YDVDADGIKM QLQKLYSRAH YAAHATPQNS LYLMRSARHQ IHG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.25967	0.0	fruit\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269\|PubMed:11937495}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001281288.1	0.0	transcription factor DIVARICATA-like
Swissprot	Q8S9H7	2e-90	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	D9ZJ70	0.0	D9ZJ70_MALDO; MYBR domain class transcription factor
STRING	XP_008381966.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF466	34	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11280.2	3e-87	MYB family protein

Link Out ? help Back to Top
Phytozome	MDP0000277813
Entrez Gene	103444803

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]