PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000278387
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 346aa    MW: 39403.2 Da    PI: 5.2773
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000278387genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.58e-34181342118
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                    p+GfrFhPt +elv++yLk k ++k++++ ++i+e+d+++++PwdL +++ +++  wyfFs++d ky +++r+n +t  g Wk tgk+++++++ +
  MDP0000278387  18 PVGFRFHPTPDELVDHYLKLKKQDKDFKC-DHIAEFDVCNFDPWDLAARIPSDDMVWYFFSRKDYKYINSNRSNPTTPGGHWKITGKERAIKARrS 112
                    89***************************.89**************99999999**************************************9856 PP

            NAM  97 gelvglkktLvfykgrapkgek 118
                    ++l+g k+tL+fy+  +pk++k
  MDP0000278387 113 KALIGKKRTLTFYRRCQPKPKK 134
                    667**********998888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-3814156IPR003441NAC domain
PROSITE profilePS5100532.21817157IPR003441NAC domain
PfamPF023651.5E-1618130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGTLGSNRKR RVGGASDPVG FRFHPTPDEL VDHYLKLKKQ DKDFKCDHIA EFDVCNFDPW  60
DLAARIPSDD MVWYFFSRKD YKYINSNRSN PTTPGGHWKI TGKERAIKAR RSKALIGKKR  120
TLTFYRRCQP KPKKPTGSCT SSISLIKDFV LCRMKKNSDM EDTSIGEVEL GSYSVSNVED  180
YAAAVVTPEV RMRTVSSLNI FLMDVDLLKL NASLFHALHS QDYSSSTFLS SGYIELGDIP  240
HGNDNIDDCN AMQSPFGYNN YSYPDKNDIS TCDEGEPPDF TMSDFENEVP DHMSQEVCPP  300
REENLELFFY PPQPEDYTLE PLMNLTVGNV LHDNNYIACN EFRSPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-221815816171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028955814.10.0NAC domain-containing protein 71-like
TrEMBLA0A498KME30.0A0A498KME3_MALDO; Uncharacterized protein
STRINGXP_008360312.11e-127(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14450518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.32e-31NAC transcription factor-like 9