PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000278738
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 256aa    MW: 29337.4 Da    PI: 7.2929
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000278738genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.45e-25959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   +rienk+ rqvtf+kRr+g++KK +ELSvLCda++ + ifsstgk++ y+s
  MDP0000278738  9 SRIENKTTRQVTFAKRRAGLIKKTHELSVLCDAQIGLFIFSSTGKMFQYCS 59
                   59***********************************************96 PP
2K-box55.62.3e-1980152981
          K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 
                     +++++e+++ el k+++e++ L+ ++ ++ GedL+ + +++L +Le+qLe s++k+R++K e+l +qi +l 
  MDP0000278738  80 PQHNDTEYMNAELGKMRRETHHLELSLQRYTGEDLSCIRFEDLVELEHQLEASVNKVRARKFEVLQQQIANLL 152
                    578899***************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.338161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-37160IPR002100Transcription factor, MADS-box
CDDcd002652.45E-38276No hitNo description
SuperFamilySSF554553.53E-28282IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-26323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-263859IPR002100Transcription factor, MADS-box
PfamPF014861.8E-1681153IPR002487Transcription factor, K-box
PROSITE profilePS5129712.59685186IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGRGKITISR IENKTTRQVT FAKRRAGLIK KTHELSVLCD AQIGLFIFSS TGKMFQYCSE  60
ASSVDELIQR YQVAKGIRIP QHNDTEYMNA ELGKMRRETH HLELSLQRYT GEDLSCIRFE  120
DLVELEHQLE ASVNKVRARK FEVLQQQIAN LLATIKAHQA AAFGHDLQAH NEAHEQLENL  180
EMIRKSEEHR HVLDQFPFTG EEQPSSVLQL ATLQPQPQFN LYPHQPAHHH PGLLDFNLSG  240
PSIYGIRIYT AVIHII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-20171169MEF2C
5f28_B8e-20171169MEF2C
5f28_C8e-20171169MEF2C
5f28_D8e-20171169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028964800.11e-178MADS-box protein FBP24-like
SwissprotQ9ATE52e-63FBP24_PETHY; MADS-box protein FBP24
TrEMBLA0A498IUD80.0A0A498IUD8_MALDO; Uncharacterized protein
STRINGXP_009353975.11e-170(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.31e-52MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]