PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000279204
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 904aa    MW: 99211.9 Da    PI: 8.5831
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000279204genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.6e-08785833348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v + G+g+W+ I r        Rt  ++k++w+++l
    MDP0000279204 785 AWTLVEVIKLVEGVSKCGTGRWSEIKRLSFasySYRTSVDLKDKWRNLL 833
                      7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF548216.41E-53696IPR001351Ribosomal protein S3, C-terminal
PfamPF001894.2E-55197No hitNo description
Gene3DG3DSA:3.30.1140.321.2E-45298IPR001351Ribosomal protein S3, C-terminal
PROSITE profilePS5129413.869778837IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-11780839IPR009057Homeodomain-like
SuperFamilySSF466891.96E-15780844IPR009057Homeodomain-like
SMARTSM007171.2E-8782835IPR001005SANT/Myb domain
CDDcd116601.82E-19784834No hitNo description
PfamPF002495.9E-6785833IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0005840Cellular Componentribosome
GO:0003677Molecular FunctionDNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
Sequence ? help Back to Top
Protein Sequence    Length: 904 aa     Download sequence    Send to blast
MAATSKKRKV SPLNECGFDV HTRPNRKSTT EGSVPLLRQS LGYKLLGGFA VRSGKIRAQR  60
AKSMKFKDGY MISSGQPVKE YIDAAVPHVL LRQVFLGLRS KSLSIGIPRS LESAAVRHYA  120
HSVLKKRAKK AEAHTDGRSA AADQSDCFPF PQSFPHKLSL RKRLVFFPTQ CPACFESVAI  180
LAILHSQGLS QLAPHSHSPM VSPVLLNFAS SAVQVCSELV GVEGNDEGMC EESGVEKSSS  240
SLSSPKQIAD PVVYKLVRVE GDGRLVPATD DEVMEVEDFL VDEMVELPVI TEAGNGWCIS  300
NEESSSGKPQ KESSEGVSHS ENTEADVKLC ARLEYIEEML QKVKQEERLR LACGTPDPSS  360
AFMNVDIQCS DQHDKLPAID EKLQSEIPLQ DIVPSSSLSP DGSHINESGR IGECSKQPLD  420
GPIESGSSAS VICTSPKPDV NTLKGEICLD NLSIRELHEL FRATFGREST VKDKLWLKRR  480
ITMGLTNSCD VSTTFTIVDN KLVNKGKDDS IQNADGMLTE GSDGEAKNLG YETSPTSHSS  540
QMENHVTVSG KRLVNISAEL DCGSEDLHTD QRAAKRVRKP TKRYIEELSE VESKDCSPKV  600
ISPVKSAGQR QTSPKSCWPL GNVPLNERAI VTRSDPLGNV TNVPSNERTF VTRLDSLGGS  660
GVQVPYVSRV RRSRPRKNIM ALMKFDMSGM GVTAKLVKEA FSMRSSVSES EHADKVLKIR  720
SASERMKPRC TAEPEKDKRR SVMGTIELRK NLGIKQTDSS EDNSDDGTAQ IPTAKGGMRR  780
KHHRAWTLVE VIKLVEGVSK CGTGRWSEIK RLSFASYSYR TSVDLKDKWR NLLKASFAQT  840
PPDDGINSRK HASVPIPASI LLKVRELAEM QVQGLCLMLK SDQFLHGKLT GGHLPVDQSN  900
VKHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v3p_SB6e-213910392178Putative 40S ribosomal protein S3
4v7e_BD6e-21391039217840S ribosomal protein S3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1670676RRSRPRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.227060.0bud| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008351352.20.0uncharacterized protein LOC103414763 isoform X1
RefseqXP_008351353.20.0uncharacterized protein LOC103414763 isoform X1
RefseqXP_008351354.20.0uncharacterized protein LOC103414763 isoform X1
TrEMBLA0A498J4Q30.0A0A498J4Q3_MALDO; Uncharacterized protein
STRINGXP_008351352.10.0(Malus domestica)
STRINGXP_008391374.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78493040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-115TRF-like 6