PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000279943
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 234aa    MW: 25679.6 Da    PI: 10.1427
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000279943genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-19140189255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    ++ GVr+++ +grW+AeIrdp+   +rkr +lg+f+t+e+Aa+a+++  + l+g
  MDP0000279943 140 RFVGVRQRP-WGRWAAEIRDPN---QRKRLWLGTFDTEEDAAAAYDRTSLMLRG 189
                    589******.**********93...36*******************99888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.4E-31140203IPR001471AP2/ERF domain
CDDcd000183.95E-28140197No hitNo description
Gene3DG3DSA:3.30.730.105.5E-28140197IPR001471AP2/ERF domain
PROSITE profilePS5103222.273140197IPR001471AP2/ERF domain
PfamPF008473.1E-13140189IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-20141197IPR016177DNA-binding domain
PRINTSPR003677.3E-9141152IPR001471AP2/ERF domain
PRINTSPR003677.3E-9163179IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSFFPLRFFI SLHHQIPNSI PPPSNSMSTV QINXSVANSN VQFSEQTTAL AKPVIHETPY  60
PTRIQPKLVR IIHADADATD SSSDDNEDSV VPAVKRXVRE INLEVPSPSS ASSSPPCSGC  120
PKLSKRAKLP PKSGPGRRER FVGVRQRPWG RWAAEIRDPN QRKRLWLGTF DTEEDAAAAY  180
DRTSLMLRGP RAVTNLPGAG ETVVADEVVA AATVGPWGRR RSICRRGEGA AYCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-18139197463ATERF1
3gcc_A3e-18139197463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.302320.0stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324270.0GU732427.1 Malus x domestica AP2 domain class transcription factor (AP2D3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008358019.23e-95pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A498H9G91e-147A0A498H9G9_MALDO; Uncharacterized protein
STRINGXP_008358019.17e-93(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.12e-23cytokinin response factor 3