PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000280005
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family G2-like
Protein Properties Length: 579aa    MW: 65912.8 Da    PI: 7.7317
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000280005genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.96.3e-30197251155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    k+r+rW+++LHe+F+e+v++LGG+ekAtPk+il++m ++gLt+ hvkSHLQkYR+
  MDP0000280005 197 KTRIRWNQDLHEKFIECVNRLGGAEKATPKAILKMMCLDGLTIFHVKSHLQKYRI 251
                    68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.33E-15195251IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-25195252IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-21197252IPR006447Myb domain, plants
PfamPF002491.1E-7201250IPR001005SANT/Myb domain
PfamPF143797.9E-18282328IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene3DG3DSA:3.30.70.3302.7E-5432463IPR012677Nucleotide-binding alpha-beta plait domain
PfamPF000761.1E-4438462IPR000504RNA recognition motif domain
SuperFamilySSF520878.44E-6489576IPR001251CRAL-TRIO lipid binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MNEKKTDCQE INQQSHELIS ECNFEVGNQS YQIFGQQQQQ AWNNMGIWVQ QPTMDHGVSL  60
LQNLGPPDPK SPSSITSRFE SLASTFYATE RCMGGFPQYD SQVGNNPHFP SGQSYNESYS  120
SMNSSEQTDL DFDIRNTLQS IVKTQPRSYQ YHKSSEKFNQ IPGSDLSGRK QSPRYSSGNV  180
STAYGNSPST SPVLSSKTRI RWNQDLHEKF IECVNRLGGA EKATPKAILK MMCLDGLTIF  240
HVKSHLQKYR IAKYLPYPAE GKSEKRTTLN LEPHLDVKTG LQIKEALQLQ LDVQRRLHEQ  300
LEIQRKLRLR IEEQGKQFKE MFDLQQQTSS SLLKTQNADV TCHEAGPSNS LDDTDQVSTS  360
EVKSXIYPSV RVSAILERKG TGGTLFLXLS GGSLEFSISL KNFVDHLTQE LKLWKIRNKL  420
IWLCWRLKKI ASYMWVAQRP PGYAFVDFDD SRDADDAIRE LDAVIDNYKQ ENITTVNARK  480
ARAFRCVLQG IAETGKAYVH DFLYVNGRPV LXVDASKHLS AVHDPAENEK LCVFLIEKAL  540
GACPEGIEEI LGIFNLHWVQ QRFFYELIRI AYFVYKCSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-21197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-21197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-21197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-21197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-21197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-21197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-21197254259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-21197254259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017192942.10.0myb family transcription factor PHL5 isoform X1
TrEMBLA0A498I6490.0A0A498I649_MALDO; Uncharacterized protein
STRINGXP_008392078.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37403465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.17e-63G2-like family protein