PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000280087

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 1182aa MW: 130570 Da PI: 6.0069

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000280087	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117.3	9.2e-37	10	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 aCaaCk++rrkCakdC+lap+fpa+qp f+n+h+l+G+sn++k+lk++++e+ e+am+s++ye+++ra+ v G++g+i++l+ ql+q+ +el + MDP0000280087 10 ACAACKYHRRKCAKDCALAPHFPADQPMMFQNAHRLYGVSNIMKILKKVHPEQEEEAMTSIIYESNMRAKFSVTGCMGIINQLNFQLQQALEELRY 105 7*********************************************************************************************99 PP DUF260 97 lkee 100 ++++ MDP0000280087 106 VRTN 109 8865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.499	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.6E-35	10	107	IPR004883	Lateral organ boundaries, LOB
Gene3D	G3DSA:2.120.10.30	1.3E-94	477	941	IPR011042	Six-bladed beta-propeller, TolB-like
SuperFamily	SSF50952	2.62E-21	492	591	IPR011041	Soluble quinoprotein glucose/sorbosone dehydrogenase
Pfam	PF07995	8.3E-23	509	858	IPR012938	Glucose/Sorbosone dehydrogenase
SuperFamily	SSF50952	2.62E-21	630	685	IPR011041	Soluble quinoprotein glucose/sorbosone dehydrogenase
SuperFamily	SSF50952	2.62E-21	723	820	IPR011041	Soluble quinoprotein glucose/sorbosone dehydrogenase
Pfam	PF01535	0.48	999	1012	IPR002885	Pentatricopeptide repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0016901	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor
GO:0048038	Molecular Function	quinone binding

Sequence ? help Back to Top
Protein Sequence Length: 1182 aa Download sequence Send to blast
MTIKGGTSQA CAACKYHRRK CAKDCALAPH FPADQPMMFQ NAHRLYGVSN IMKILKKVHP 60 EQEEEAMTSI IYESNMRAKF SVTGCMGIIN QLNFQLQQAL EELRYVRTNL AICKDQCQYR 120 LPSSSPHYSS PSPQLQLGIP TNTDAATLTL YQQHQYPYQY ASGAAGASGG MSWVGNEYLA 180 NGLNGVYIDD NDNMVKPLRV QHPYYNDNNV EQLMAVQSSL VSSQAFPVHQ EMDVPHDYDD 240 IPFDTIADDR QSYIESKEAC ESSAESSFKG TTQSIEHVSN DLKSAAACFS LTSQSHTRPR 300 DEGLANGSME LRCLSQFLWR ESLGLKCVAR GSPITPKTPL NFCRYNGSVC CDSAEDLRLQ 360 NLFKAMNVSD LGCASLVKSI LCSRCDQFSA ELYRFESAPR QVPLLCNSSQ HQPGGVDFCS 420 KVWDECQNVA LLNSPFSLQV GGGTPSNSTS KLSDTWQSKT AFCNAFGGSS NDESFCFDGG 480 PVLLNSTEIP SPPSGMCLEK IGNGSYLNMV AHPDGSNRVF LSDQAGKVWL ATVPEEESGE 540 TLVIDEANPF LDITDQVYSD TELGMMGLAF HPNYVQNGRF FASFNCDKVT WPQCSGRCSC 600 NSDVGCDPSK LEPDNGGQPC QYHSIIAEFT ANATTPQPSS FASVKPLEVR RIFTMGLPFT 660 THHAGQILFG PKDGYLYFMM GDGGSIGDPY NFAQNKKSLL GKIMRLDIDN IPSAKEIAXL 720 GLWGNYSVPG DNPFTEDEEL RPEIWALGFR NPWRCSFDLE RPSYFLCADV GQDQYEEVDL 780 VTKGGNYGWR VYEGPFRYNP PKSPGGNTSA SSINPIFPVM GYTHSEVNKA EESASITGGY 840 FYRSTTDPCM YGRYIYADLY ASXIWTGLET PEGSGNFTTA KIAVSCALDS PIQCGAEAGS 900 SVTALGFIFS FGQDNRKDIF MLTSSGLYRV AKPSRCNYTC SIENVTSSSP PKSVPSPPPS 960 PSSTGRLNNP LTLELLIIFC TLLLPFRCSL RTDIEQKVVT YNTMIKIYGK RGVQLNAITY 1020 STIKAGKLDR AAMLFQKLRR SGVXIDQVIV AYDKLGLVAH AKRLLHELKR PDNIPRGTAI 1080 TILARAGRIE EATWVFRQAF EAGEVKDISV FGCTIDPFSR NQNLYGARKD FKMVEALFER 1140 LISDPNINEL HLVVASIYDR SNRLNDASGI XNKMTERRIR MS

Sequence ? help Back to Top

Protein Sequence Length: 1182 aa Download sequence Send to blast

MTIKGGTSQA CAACKYHRRK CAKDCALAPH FPADQPMMFQ NAHRLYGVSN IMKILKKVHP  60
EQEEEAMTSI IYESNMRAKF SVTGCMGIIN QLNFQLQQAL EELRYVRTNL AICKDQCQYR  120
LPSSSPHYSS PSPQLQLGIP TNTDAATLTL YQQHQYPYQY ASGAAGASGG MSWVGNEYLA  180
NGLNGVYIDD NDNMVKPLRV QHPYYNDNNV EQLMAVQSSL VSSQAFPVHQ EMDVPHDYDD  240
IPFDTIADDR QSYIESKEAC ESSAESSFKG TTQSIEHVSN DLKSAAACFS LTSQSHTRPR  300
DEGLANGSME LRCLSQFLWR ESLGLKCVAR GSPITPKTPL NFCRYNGSVC CDSAEDLRLQ  360
NLFKAMNVSD LGCASLVKSI LCSRCDQFSA ELYRFESAPR QVPLLCNSSQ HQPGGVDFCS  420
KVWDECQNVA LLNSPFSLQV GGGTPSNSTS KLSDTWQSKT AFCNAFGGSS NDESFCFDGG  480
PVLLNSTEIP SPPSGMCLEK IGNGSYLNMV AHPDGSNRVF LSDQAGKVWL ATVPEEESGE  540
TLVIDEANPF LDITDQVYSD TELGMMGLAF HPNYVQNGRF FASFNCDKVT WPQCSGRCSC  600
NSDVGCDPSK LEPDNGGQPC QYHSIIAEFT ANATTPQPSS FASVKPLEVR RIFTMGLPFT  660
THHAGQILFG PKDGYLYFMM GDGGSIGDPY NFAQNKKSLL GKIMRLDIDN IPSAKEIAXL  720
GLWGNYSVPG DNPFTEDEEL RPEIWALGFR NPWRCSFDLE RPSYFLCADV GQDQYEEVDL  780
VTKGGNYGWR VYEGPFRYNP PKSPGGNTSA SSINPIFPVM GYTHSEVNKA EESASITGGY  840
FYRSTTDPCM YGRYIYADLY ASXIWTGLET PEGSGNFTTA KIAVSCALDS PIQCGAEAGS  900
SVTALGFIFS FGQDNRKDIF MLTSSGLYRV AKPSRCNYTC SIENVTSSSP PKSVPSPPPS  960
PSSTGRLNNP LTLELLIIFC TLLLPFRCSL RTDIEQKVVT YNTMIKIYGK RGVQLNAITY  1020
STIKAGKLDR AAMLFQKLRR SGVXIDQVIV AYDKLGLVAH AKRLLHELKR PDNIPRGTAI  1080
TILARAGRIE EATWVFRQAF EAGEVKDISV FGCTIDPFSR NQNLYGARKD FKMVEALFER  1140
LISDPNINEL HLVVASIYDR SNRLNDASGI XNKMTERRIR MS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-23	6	110	7	111	LOB family transfactor Ramosa2.1
5ly0_B	3e-23	6	110	7	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008341526.2	0.0	HIPL1 protein-like
Swissprot	Q9SSG3	0.0	HIPL1_ARATH; HIPL1 protein
TrEMBL	A0A498HHK3	0.0	A0A498HHK3_MALDO; Uncharacterized protein
STRING	XP_008341526.1	0.0	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	4e-36	LOB domain-containing protein 27

Link Out ? help Back to Top
Phytozome	MDP0000280087

Publications ? help Back to Top
Sherrier DJ,Prime TA,Dupree P Glycosylphosphatidylinositol-anchored cell-surface proteins from Arabidopsis. Electrophoresis, 1999. 20(10): p. 2027-35 [PMID:10451111] Dunkley TP,Watson R,Griffin JL,Dupree P,Lilley KS Localization of organelle proteins by isotope tagging (LOPIT). Mol. Cell Proteomics, 2004. 3(11): p. 1128-34 [PMID:15295017] Borner GH, et al. Analysis of detergent-resistant membranes in Arabidopsis. Evidence for plasma membrane lipid rafts. Plant Physiol., 2005. 137(1): p. 104-16 [PMID:15618420]