PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000280911
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-X1
Protein Properties Length: 1260aa    MW: 137853 Da    PI: 7.9675
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000280911genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X119.91.7e-06509526118
       zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                    CG+H+C++ CH+GpC+ C
  MDP0000280911 509 CGNHSCSEVCHPGPCGDC 526
                    ****************99 PP
2zf-NF-X117.11.2e-05663680118
       zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                    CG+H+C++lCH G CppC
  MDP0000280911 663 CGQHSCESLCHSGHCPPC 680
                    ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578502.83E-7268337No hitNo description
PROSITE profilePS500168.849275336IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.553278334IPR001841Zinc finger, RING-type
PROSITE patternPS013590278333IPR019786Zinc finger, PHD-type, conserved site
CDDcd060083.82E-6367428No hitNo description
SMARTSM004380.21390408IPR000967Zinc finger, NF-X1-type
PfamPF014229.2392407IPR000967Zinc finger, NF-X1-type
CDDcd060082.46E-11435483No hitNo description
SMARTSM004385.8E-4445464IPR000967Zinc finger, NF-X1-type
PfamPF014225.3E-4447462IPR000967Zinc finger, NF-X1-type
CDDcd060081.19E-11499542No hitNo description
SMARTSM004384.4E-5509528IPR000967Zinc finger, NF-X1-type
PfamPF014221.5E-4509526IPR000967Zinc finger, NF-X1-type
CDDcd060086.72E-12557603No hitNo description
SMARTSM004387.5E-5567586IPR000967Zinc finger, NF-X1-type
PfamPF014221.5E-4567584IPR000967Zinc finger, NF-X1-type
CDDcd060081.54E-4615674No hitNo description
SMARTSM00438120625655IPR000967Zinc finger, NF-X1-type
PfamPF0142221625636IPR000967Zinc finger, NF-X1-type
CDDcd060084.54E-8653696No hitNo description
SMARTSM004380.002663682IPR000967Zinc finger, NF-X1-type
PfamPF014221.1E-4663680IPR000967Zinc finger, NF-X1-type
CDDcd060081.59E-6710758No hitNo description
SMARTSM004380.036720738IPR000967Zinc finger, NF-X1-type
PfamPF014227.2720736IPR000967Zinc finger, NF-X1-type
SMARTSM004380.042773793IPR000967Zinc finger, NF-X1-type
PfamPF014220.15773791IPR000967Zinc finger, NF-X1-type
CDDcd060082.48E-5801850No hitNo description
PfamPF0142277805827IPR000967Zinc finger, NF-X1-type
SMARTSM004380.041812833IPR000967Zinc finger, NF-X1-type
PfamPF014243.5E-59441008IPR001374R3H domain
Gene3DG3DSA:3.30.70.3301.7E-510471098IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1260 aa     Download sequence    Send to blast
MENRNSNNSR KMEEGFEEVG FPVHSQVRKI KQESDKTIDW LPGNPEMRRP VFKEITRQLQ  60
VGFLGVDFFE ELFCSDSISY FGTLSENRRS DSLEVSQNMS FRVQNERRDR SRFPAQPATQ  120
PTQPARREWV LRGTDPTTTT AAVNPPPRVY PNNPNVNANQ PNPRFNPNNP NGNVSQPNPR  180
FNPSNLNGNL SQPNPRFNPN NLNGNAGLPN HSSVPPSEIR PHRGGNNGVI KGHMGQSVNH  240
RRERGRSENQ EEKGLKDSNL PQLVQEIQDK LTRGTVECMI CYEMVRRSAP VWSCSSCYSI  300
FHLNCIKKWA RAPTSIDMSA EKNQGFNWRC PGCQSVQLTS SKEIRYVCFC GKRTDPPSDL  360
YLTPHSCGEP CGKQLEREVP GNGVSKEDLC PHICVLQCHP GPCPPCKAFA PPRLCPCGKK  420
TITTRCSDRA SVLTCGQDCN KLLDCWRHRC ERTCHVGPCD PCQVLVDASC FCKKKVEVVL  480
CGDMTVKGEV KAEDGVFSCS STCGKMLSCG NHSCSEVCHP GPCGDCNLMP TRIKTCHCGK  540
TSLQEERRSC LDPIPTCSQL CSKSLPCEMH QCQEVCHTGD CPPCLVEVTQ KCRCGSTSRT  600
AECFKTTMEN EKFTCDKPCG RKKNCGRHRC SERCCPLSNL NNALLGNWDP HFCSMSCGKK  660
LRCGQHSCES LCHSGHCPPC LDTIFTDLTC ACGRTSIPPP LPCGTPPPSC QLPCSVPQPC  720
GHTSSHSCHF GDCPPCAVPV AKECIGGHVV LRNIPCGSRD IKCNKLCGKT RQCGMHACGR  780
TCHPPPCDTS CLAEQGSKTS CGQICGAPRR DCRHTCTSLC HPYASCPDSS CDFPVTITCS  840
CGRMTASVPC DSGGSNASFK ADTVYEASIV QRLPAPLQPI ESTSKNIPLG QRKLMCDDEC  900
AKMERKRVLA DAFDITPPNL DALHFGESSA VSELLSDLLR RDPKWVLSVE ERCKYLVLGK  960
SRGATSGLKV HVFCPMLKEK RDVVRMIAER WKLAVQAAGW EPKRFIVVHV TPKSKAPARI  1020
LGVKGTTTVS APKPPSYDHL VDMDPRLVVS FPDLPRDADI SALVLRFGGE CELVWLNDKN  1080
ALAVFNDPAR AATAMRRLDN GALYHGAIVV HSNGSASMAA SGSNAWGGLG TSREGGASAV  1140
LMGNPWKKTV TRESGWREDS WGEEEWPGSS TDAPANVWNK KAPIAASVNR WSVLDGDTAL  1200
GSSASSLRVE DYRKLSLGPL NSALDSKASG SSSSSTFEGQ PVGVIAETPE VVDDWEKAYE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.83920.0fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008374871.20.0LOW QUALITY PROTEIN: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A498JS540.0A0A498JS54_MALDO; Uncharacterized protein
STRINGXP_008374871.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1