PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000281698
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 326aa    MW: 36353.2 Da    PI: 4.4642
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000281698genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.8e-1982136357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                    k++++t++q++ Le+ Fe+++++  e++ +LAk+lgL+ rqV +WFqNrRa++k+
  MDP0000281698  82 KKRRLTANQVQFLEKNFESENKLEPERKVQLAKELGLQPRQVAIWFQNRRARYKN 136
                    56689************************************************95 PP
2HD-ZIP_I/II127.84.6e-4182172292
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                    kkrrl+++qv++LE++Fe+e+kLeperKv+la+eLglqprqva+WFqnrRAR+k+kqlEkdy++Lk++y +lk + ++L ke+ +L++e++
  MDP0000281698  82 KKRRLTANQVQFLEKNFESENKLEPERKVQLAKELGLQPRQVAIWFQNRRARYKNKQLEKDYDSLKASYGKLKVDADNLLKENGSLKNEID 172
                    9**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.05E-1970139IPR009057Homeodomain-like
PROSITE profilePS5007117.5477137IPR001356Homeobox domain
SMARTSM003896.6E-1879141IPR001356Homeobox domain
CDDcd000862.87E-1880138No hitNo description
PfamPF000467.3E-1782136IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-2084145IPR009057Homeodomain-like
PRINTSPR000315.0E-6108117IPR000047Helix-turn-helix motif
PROSITE patternPS000270112135IPR017970Homeobox, conserved site
PRINTSPR000315.0E-6117133IPR000047Helix-turn-helix motif
PfamPF021834.9E-14137178IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGSMKTINKA KADIEDTAAA GEFAPVEPLR VGRKTESVVA SNSMVNFGNV SGGDSLDRPF  60
FQPKEENEDE DYDGSYLHQP GKKRRLTANQ VQFLEKNFES ENKLEPERKV QLAKELGLQP  120
RQVAIWFQNR RARYKNKQLE KDYDSLKASY GKLKVDADNL LKENGSLKNE IDSIKDILLS  180
REKGKPGKGN SDSQDAINTS DLEPRNAILN AGSENVTKVA MVVCKQEDAS SAKSDVFDSD  240
SPHCTENHSS LLEPADSSHV FEPADQSDFS QDEDDDLGKT LLPPPPPNLL KLEDCCYDDL  300
PPPSSSNFGY IPLDDQDQQP FCFWPY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129137RRARYKNKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.144051e-170leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008389534.10.0homeobox-leucine zipper protein HAT5
TrEMBLA0A498IC730.0A0A498IC73_MALDO; Uncharacterized protein
STRINGXP_008389534.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.16e-41homeobox 1