PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000282334

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Dof

Protein Properties

Length: 524aa MW: 55549.7 Da PI: 5.9485

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000282334	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.4	3.7e-39	161	221	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG +rnvPvG+grrknk+ss MDP0000282334 161 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGIMRNVPVGAGRRKNKNSS 221 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-31	146	218	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.9E-32	163	219	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.798	165	219	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	167	203	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence Send to blast
MSSEGEGGGG GHTIKLFGKT IPLAMAPLNR ESSSAIDEPC GSVDHDVAAT ACGGGGGGAE 60 DCSETRQKLS SSSSAATNSG EDNLEREGDA QQEETKSGKE LAADKQDADT SDLITEDLKA 120 PTTSSGISEN PKTPSADRET SCKNGDQSET SSSQDKTLKK PDKILPCPRC NSMDTKFCYY 180 NNYNVNQPRH FCKNCQRYWT AGGIMRNVPV GAGRRKNKNS SASQFHHVLM SDAFQAAHAS 240 AANGVHNATL GSNGTVLNFG SDSPLCESMA SVLNLAEKNQ NCMQNGFRGP EQRLLVSPTA 300 GDNGDDRSSG SSITASNSTE RGGKANLQEP SAQKCQSFPP QVPCFPGSPW PYPCNSAQWA 360 SAMPPPGFCH SGFPMAFYPA PPYWGCTVPG SWNVPCLSPS STLSHCTTSS GPNSPTLGKH 420 SRDEDIPNPS SSENEEPAKD NSSERCVWIP KTLRIDDSNE AARSSAWATL GIRNERGNCA 480 NEGGGHFKAF QSKGDEKTPA VEASRALQSN PAAFSRSLNF HERT

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence Send to blast

MSSEGEGGGG GHTIKLFGKT IPLAMAPLNR ESSSAIDEPC GSVDHDVAAT ACGGGGGGAE  60
DCSETRQKLS SSSSAATNSG EDNLEREGDA QQEETKSGKE LAADKQDADT SDLITEDLKA  120
PTTSSGISEN PKTPSADRET SCKNGDQSET SSSQDKTLKK PDKILPCPRC NSMDTKFCYY  180
NNYNVNQPRH FCKNCQRYWT AGGIMRNVPV GAGRRKNKNS SASQFHHVLM SDAFQAAHAS  240
AANGVHNATL GSNGTVLNFG SDSPLCESMA SVLNLAEKNQ NCMQNGFRGP EQRLLVSPTA  300
GDNGDDRSSG SSITASNSTE RGGKANLQEP SAQKCQSFPP QVPCFPGSPW PYPCNSAQWA  360
SAMPPPGFCH SGFPMAFYPA PPYWGCTVPG SWNVPCLSPS STLSHCTTSS GPNSPTLGKH  420
SRDEDIPNPS SSENEEPAKD NSSERCVWIP KTLRIDDSNE AARSSAWATL GIRNERGNCA  480
NEGGGHFKAF QSKGDEKTPA VEASRALQSN PAAFSRSLNF HERT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.11639	0.0	bud\| fruit\| leaf\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008339890.2	0.0	cyclic dof factor 2-like
TrEMBL	A0A498HEN6	0.0	A0A498HEN6_MALDO; Uncharacterized protein
STRING	XP_008361785.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	8e-98	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	MDP0000282334