PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000283117
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TALE
Protein Properties Length: 219aa    MW: 25031.4 Da    PI: 6.5157
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000283117genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.71.1e-091421791954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yp+ +e+  LA+++gL+++qV +WF N R +
  MDP0000283117 142 FEHflHPYPNDNEKLLLASQTGLSKNQVANWFINARVR 179
                    664459******************************98 PP
2BELL101.66e-33575272
           BELL  2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                   ++elq++ a L++lle+V++r   y++q+++vissFe+v+g g+ak+Yt+lAlka+SrhF +L+dai++qi
  MDP0000283117  5 KHELQARLASLITLLEQVEDRCGTYYHQMEQVISSFEMVVGEGAAKSYTALALKAMSRHFCSLRDAIVSQI 75
                   79********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-5173IPR006563POX domain
PfamPF075261.4E-28372IPR006563POX domain
PROSITE profilePS5007111.693120183IPR001356Homeobox domain
SMARTSM003891.2E-7123187IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-26128189IPR009057Homeodomain-like
SuperFamilySSF466892.91E-17129190IPR009057Homeodomain-like
CDDcd000864.05E-10129184No hitNo description
PfamPF059201.5E-16140179IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MNSDKHELQA RLASLITLLE QVEDRCGTYY HQMEQVISSF EMVVGEGAAK SYTALALKAM  60
SRHFCSLRDA IVSQIYTEKR KLLQDVPKIS SGLSQLNLLD RECRHKRMSL QQLGIFQSQR  120
QAFRPIRGLP ETSVAILRTW LFEHFLHPYP NDNEKLLLAS QTGLSKNQVA NWFINARVRL  180
WKPMIEEMYK EEFGESSEDS NSLAAGSMTG EGNTDQTED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-16129187563Homeobox protein Meis2
3k2a_B6e-16129187563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008377194.21e-162LOW QUALITY PROTEIN: BEL1-like homeodomain protein 11
SwissprotQ1PFD11e-86BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A498J8L01e-153A0A498J8L0_MALDO; Uncharacterized protein
STRINGXP_008377194.11e-161(Malus domestica)
STRINGXP_008377240.11e-163(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126452329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.15e-89BEL1-like homeodomain 11