PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000283606
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 193aa    MW: 22355.3 Da    PI: 6.8829
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000283606genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.52.3e-082672253
                   HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
            HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53
                   r ++ +++r+RR++  +++  Lr+l+P  +      Kl+ a+iL  A+eY+ +
  MDP0000283606 26 RSKNLIADRKRRKKFCDRLYALRSLVPIiS------KLDRASILGDAIEYVIQ 72
                   56677899********************66......**************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-132384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.7672473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-62672IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.74E-72670No hitNo description
Gene3DG3DSA:4.10.280.101.1E-112686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-93079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MLDCSDQIDK EEDVKYQRRR TRKWPRSKNL IADRKRRKKF CDRLYALRSL VPIISKLDRA  60
SILGDAIEYV IQXQKQAKQL QDKLDDHAED DGANNNVKSE IQSQSGVXHI RPKTDDHQDD  120
HKASNGFHFG TPGDCSFSKQ SQDYSYVVHD HKTEQMEKXD SEXVEXDDVR DSLLELKRNP  180
SIRXGETAKA AEN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11738RRRTRKWPRSKNLIADRKRRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028959482.11e-77transcription factor ABORTED MICROSPORES
TrEMBLA0A498J1H11e-116A0A498J1H1_MALDO; Uncharacterized protein
STRINGXP_008365882.11e-135(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.12e-20bHLH family protein