PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000283949
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family DBB
Protein Properties Length: 485aa    MW: 53054.8 Da    PI: 7.385
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000283949genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.62.2e-071761240
       zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                   ++r+C+ ++   + l+C+ ++  lC +C  e H+       Ht++
  MDP0000283949 17 QKRVCDYCGTSMALLYCRADSAKLCFSCDREVHSAnqlftkHTRS 61
                   789*******99*********************667888888875 PP
2zf-B_box315.3e-1062108441
       zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg.........Htvvp 41 
                      C+ +++ ++++fC++ ++ lC++C  e+H+          H+++p
  MDP0000283949  62 LLCDACDKSPASIFCTTEGSVLCQNCDWESHNIsssaaatavHDRRP 108
                    57*****************************5477777777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.6511663IPR000315B-box-type zinc finger
SMARTSM003365.9E-151663IPR000315B-box-type zinc finger
PfamPF006438.0E-71761IPR000315B-box-type zinc finger
CDDcd000213.47E-71963No hitNo description
PROSITE profilePS5011910.75159109IPR000315B-box-type zinc finger
PfamPF006432.1E-762107IPR000315B-box-type zinc finger
CDDcd000211.45E-56392No hitNo description
SMARTSM003361.464109IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MEKMNGGTRN EEPGATQKRV CDYCGTSMAL LYCRADSAKL CFSCDREVHS ANQLFTKHTR  60
SLLCDACDKS PASIFCTTEG SVLCQNCDWE SHNISSSAAA TAVHDRRPLE GFSGCPCLSE  120
LLAFVGFENM DKKALLLSDE GGGGGGGGFL GCGVDGFSDL EDGFSDFLVW DTPSVISLDD  180
LIVSNPAYKF QAMGVPPLPK NRNAACGQHK EEIIHQLRLL VKSEPNLFSE DVDVKSLKGF  240
QFLASKQNTQ PGSFLTGFGY DTEPTAFPAQ EAHESQYNGC KAANHDSCPK TSMRSYLQDC  300
CVAPDKHSYN DGTGSRANEG HGGQMNSEAS AGFPKVVPHE ISCQNRETAL SRYKEKKKTR  360
RIAAAEDRPE KWWTDYLENG LNLVEAVAAF IATFALCPYA IAAVAYAYLN KERANHAMTL  420
KFGLGGKKAT IKELPSGLGN ITRQKNLFTG IPQYKQVASW NFKRRTVTKH EADARKLSIT  480
YRGRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.137500.0bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028956219.10.0LOW QUALITY PROTEIN: zinc finger protein CONSTANS-LIKE 13-like
TrEMBLA0A498K5I20.0A0A498K5I2_MALDO; Uncharacterized protein
STRINGXP_009378903.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.12e-77B-box type zinc finger protein with CCT domain