PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000284588
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GeBP
Protein Properties Length: 945aa    MW: 106324 Da    PI: 7.1299
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000284588genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57335.92.1e-113734155298
         DUF573  52 sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                    + l++Kir+LKkK++  ++     ++ +fsk+h+ k+fel+kkiWgs
  MDP0000284588 373 EKLTDKIRKLKKKYQAGEDS----EDSVFSKPHELKCFELCKKIWGS 415
                    689************99998....999******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.44E-1241101IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.4E-1151105IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.97452101IPR019787Zinc finger, PHD-finger
SMARTSM002492.0E-75499IPR001965Zinc finger, PHD-type
PROSITE patternPS0135905598IPR019786Zinc finger, PHD-type, conserved site
PfamPF045043.4E-11344414IPR007592Protein of unknown function DUF573
SuperFamilySSF533832.02E-133451885IPR015424Pyridoxal phosphate-dependent transferase
TIGRFAMsTIGR017888.0E-209458885IPR010107Glutamate decarboxylase
PfamPF002827.3E-106475822IPR002129Pyridoxal phosphate-dependent decarboxylase
CDDcd064502.38E-108500880No hitNo description
Gene3DG3DSA:3.40.640.103.5E-31516753IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1
Gene3DG3DSA:3.90.1150.102.5E-4788881IPR015422Pyridoxal phosphate-dependent transferase, major region, subdomain 2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006536Biological Processglutamate metabolic process
GO:0004351Molecular Functionglutamate decarboxylase activity
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0030170Molecular Functionpyridoxal phosphate binding
Sequence ? help Back to Top
Protein Sequence    Length: 945 aa     Download sequence    Send to blast
MVLKSTIPGS VEAGKNDVCI PILQSYEIKN VPLRKTRSPQ VLGIDISLGG DVQSCKRCRR  60
SESISNMLIC DRCEEAFHVK CCKPRVVFPV DDWFCGSCSK IMSEKLQNDS FLKSPSSMGL  120
RFGLTCKFEL GPIAVMLKYP EPFTSKVRIG EAYQVEVPDW CHQIPKTPLS EVENDDGDCS  180
LAAVLDPSHS DCADRPPLNF LFVQFLTHYS YTEQTLKEET RKSMYLYAYM PPNCKVQITN  240
TKWCFPNSRP FISLFDGFED DSRFELEIES DSHSLSASDF TVKLIVSKPA NNAVMPSKKI  300
ASAKPAVAPN FGSKRPTETE PSPKNSKKKK VGDDDEDTKK RQCFWSEDEI TILKCIIEFE  360
SKKGRFEHRP MAEKLTDKIR KLKKKYQAGE DSEDSVFSKP HELKCFELCK KIWGSEANGL  420
DSNVKGGKRK PPRKNNKFIK MAISTTSGDR LGELVNCTFA SRYVRNDLPK FQMPATSIPK  480
DAAYQIINDE LMLDGNPRLN LASFVTTWME PECDRLMMAS MNKNYVDMDE YPVTTELQNR  540
CVNMIANLFN APIGDGETAV GVSTVGSSEA IMLAGLAFKR KWQHKRKLEG KPSDKPNIVT  600
GANVQVCWEK FARYFEVELK EVKLSEGYYV MDPTKAIEMV DENTICVAAI LGSTLTGEFE  660
DVKLLNDLLA EKNKQTGWDT PIHVDAASGG FIAPFLYPEL EWDFRLPLVK SINVSGHKYG  720
LVYAGVGWVV WRSKEDLPDE LVFHINYLGS DQPTFTLNFS KGSSQIIAQY YQFIRLGFEG  780
YKNVMINCVE NTRLLREGLE KTGRFEILSK DIGVPLVAFS LKDSSKHTVF EVADSLRKFG  840
WIVPAYTMPA NAEHVAVLRV VIREDFSRGL AERLVSDIDK VMREIDTLPS HVSSKAAHVT  900
ATVDEVVRGS EGVVKPIVHK SATEIEQEVV SRWKELVNGR KTGVC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hbx_A0.045594514502Glutamate decarboxylase 1
3hbx_B0.045594514502Glutamate decarboxylase 1
3hbx_C0.045594514502Glutamate decarboxylase 1
3hbx_D0.045594514502Glutamate decarboxylase 1
3hbx_E0.045594514502Glutamate decarboxylase 1
3hbx_F0.045594514502Glutamate decarboxylase 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.220300.0bud| cell culture| fruit
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the production of GABA. The calmodulin-binding is calcium-dependent and it is proposed that this may, directly or indirectly, form a calcium regulated control of GABA biosynthesis (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8122420.0KC812242.1 Malus domestica cultivar Empire glutamate decarboxylase 1 (GAD1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028959957.10.0glutamate decarboxylase 4-like
SwissprotP547670.0DCE_SOLLC; Glutamate decarboxylase
TrEMBLA0A498I7V50.0A0A498I7V5_MALDO; Glutamate decarboxylase
STRINGXP_009355970.10.0(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.13e-09DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Gallego PP,Whotton L,Picton S,Grierson D,Gray JE
    A role for glutamate decarboxylase during tomato ripening: the characterisation of a cDNA encoding a putative glutamate decarboxylase with a calmodulin-binding site.
    Plant Mol. Biol., 1995. 27(6): p. 1143-51
    [PMID:7766895]