PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000285251
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 2583aa    MW: 288424 Da    PI: 9.1529
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000285251genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.39.6e-1210941120127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                     ++++ C +++rtG C+yG++C+F+H++
  MDP0000285251 1094 PGEPDCIYYLRTGLCSYGSNCRFNHPK 1120
                     5789*********************96 PP
2zf-CCCH35.81.4e-1111381162327
                     S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH    3 telCrffartGtCkyGdrCkFaHgp 27  
                     ++ C +f++tGtCkyG++CkF+H++
  MDP0000285251 1138 QPDCGYFLKTGTCKYGSTCKFHHPR 1162
                     789********************96 PP
3zf-CCCH35.31.9e-1111851207527
                     --SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH    5 lCrffartGtCkyGdrCkFaHgp 27  
                      C++++rtG Ck+G+ CkF+H++
  MDP0000285251 1185 SCPYYMRTGSCKFGPACKFHHPQ 1207
                     6********************97 PP
4zf-CCCH35.22.1e-1113231348227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHgp 27  
                     ++++Cr+f+ tGtCkyG  Ck++H++
  MDP0000285251 1323 DQPECRYFMNTGTCKYGIDCKYHHPK 1348
                     689*********************96 PP
5zf-CCCH32.41.5e-1013651390126
                     --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHg 26  
                     ++++ C+f++ +G+CkyG++C+F H+
  MDP0000285251 1365 PGQPVCSFYLMYGICKYGPTCRFDHP 1390
                     5789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF164862.1E-2750235IPR032474Protein argonaute, N-terminal
SMARTSM011632.4E-19245297IPR014811Argonaute, linker 1 domain
PfamPF086993.4E-15247294IPR014811Argonaute, linker 1 domain
SuperFamilySSF1016901.88E-39292456IPR003100PAZ domain
Gene3DG3DSA:2.170.260.108.3E-28297422No hitNo description
CDDcd028462.82E-29297415No hitNo description
PfamPF021704.9E-26301432IPR003100PAZ domain
PROSITE profilePS5082113.115317416IPR003100PAZ domain
PfamPF164882.0E-12442487IPR032472Argonaute linker 2 domain
Gene3DG3DSA:3.40.50.23005.9E-12475624No hitNo description
SuperFamilySSF530981.8E-36571795IPR012337Ribonuclease H-like domain
PfamPF021719.2E-51585797IPR003165Piwi domain
SMARTSM009506.9E-40585818IPR003165Piwi domain
PROSITE profilePS5082222.747585791IPR003165Piwi domain
Gene3DG3DSA:3.30.420.102.9E-10652798IPR012337Ribonuclease H-like domain
SMARTSM003563.0E-610931120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.36110931121IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-910951120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-510981120IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-611351162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.79311351163IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-911381162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-511401164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-411411162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-611791208IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.37111811208IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-511821207IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-911841207IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-411851206IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-513211348IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.7613211349IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-813231348IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-513231349IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-413271348IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69913641392IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-713641391IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-713661390IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-513671393IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.40.50.18205.4E-6217662079IPR029058Alpha/Beta hydrolase fold
PfamPF040839.3E-1917671824IPR006693Partial AB-hydrolase lipase domain
SuperFamilySSF534745.35E-2517691943IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF534745.35E-2519942078IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18202.8E-7222962581IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF534741.33E-3523062581IPR029058Alpha/Beta hydrolase fold
PfamPF005619.5E-923122437IPR000073Alpha/beta hydrolase fold-1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006629Biological Processlipid metabolic process
GO:0003676Molecular Functionnucleic acid binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 2583 aa     Download sequence    Send to blast
MEDVAXAGIA DGELQPAPPS PTIPPKLKPE VVTPSKYSIM SRRGTGTTGK EINLLANHFK  60
VSVNVPDAVF YQYSVSITSE DKKVVEGKGI GRKLIDRLYQ TYSSELGGKK FAYDGEKALY  120
TVGPLPQNKL EFTVVLEETF AKQYVLLLFL VLGLKRSFLI SLMLHLCDST SIFRVSENGS  180
TNGTEKRSRR SFRSRTFNLE ISYAAKIPLK PISLVLEGAD VENTQDSLRV LDIILRQQAA  240
NRGCLLVRQS FFHDDSRNFT DVGGGVKGVR GFHSSFRPTQ GGLSLNMDVS TTMILTPGPV  300
IDFLLANQDV REPRYIDWVK AKRMLKNMRI NARHRNMEFK IIGLSEKPCN QQYFPMKLKI  360
GDNGTSEDQT VEITVYEYFT KHCGVEITSS QYMPCLDVGK PKRPNYLPLE LCSLVSLQRY  420
TKALSSKQRA SLVEKSRQKP QERIRTVTDA MKKYQYDDDP VLATCGISIN KELTQVKGRV  480
LETPKLKVGN SDDCIPRNGR WNFNNKTLLN PTRIDRWIVV NFSARCDTSH LSRELINCGR  540
KKGIIIERPF TLIEEDPQCR RLTPVARVDK MFEQILAKLP GEPQFILCVL PEKKNSDIYG  600
PWKKQSLTEF GIATQCISPT KISDQYLTNL GGINSLLAIE HSSRVPLVKD TPTMILGMDV  660
SHGSPGRSDI PSVAAVVSSR SWPLISRYRA AVRTQSPKME MIAALYKPLE NGTDAGIIRE  720
LLVDFYKTSN GRKPTQIIVF RDGVSESQFN QVLNIELDQI IKAYQHLGEV NVPKFTLIIA  780
QKNHHTKLFQ QGSPDNVPAV APICYAHLAA AQVGQFMKFE DLSETSSGKG SVTSSESVPV  840
PELPKLHENV YGQLVASSDS DLCLVMFNFI LKLPTKSCRR YXATVMSRVT DVIAYVNFFX  900
HTLASLTSHD VIPLHKRYTI DTKLQRRYTI DTDHSRYYRP TSQRPGISVL SAETSRRYEK  960
SKPSAAIDGA FPVFDQHHHV HRPPHSPLIL IWALFFCKFV GFGRWVAAIF LRKFEAFCMT  1020
LVGEAEKKSR GKQHKGRVHA NSVLPPMPDA RQAQKNAIPN QSDGNVEEAF WRLTINDNQE  1080
RGGVAQANLY PDRPGEPDCI YYLRTGLCSY GSNCRFNHPK YASQGNQYNG ELPERVGQPD  1140
CGYFLKTGTC KYGSTCKFHH PRDRRGAGPV LFNVLGLPMH QEEKSCPYYM RTGSCKFGPA  1200
CKFHHPQPQS LGTVLPAFGS AGSTVVPSSG VPYVGGLSTW SIPRVPYISG PRLQTPQSYM  1260
PVVLPPQGIV PAHGWNTYVG NLSPVSSTGI LGSNLTYNSS TRGESASNGQ VHLSSPCLPQ  1320
RPDQPECRYF MNTGTCKYGI DCKYHHPKER IAESATTPLG LPSRPGQPVC SFYLMYGICK  1380
YGPTCRFDHP YMEQSASYNF GMQALPMLDS SLISYPRSWS VANGLETSPS IPPKFPNGVK  1440
KPASNKYENS DTKISEDSPE QAGSMSPSPT SSEPVQDQSE TPRWVSLECA MQRLRSSGTL  1500
LSSSQAITRL RKKAFRSWAA VQDTYFSTKD IFEGHKVVFT VGTSIASVAT AWFGYTLRHL  1560
HESRVDQRLE SIEKVMKNNH NLEQSEIRNI MDSGTIGLPS CIATAGTTLV IGYXLGWRGG  1620
RWYANRKFRR EQMKLLGQIK PKRWPLLRRI EPKVWQFQFL RRPLTRQRTQ DNPVKTSEKI  1680
RDTXTSHNLE DPINXLLHMK NYWRNVRDEE RNTLLKKPWY VNSEYDTVVL FCESAVGTRT  1740
KLFSANNVQD AASAFAPSPG DDGICATMVA TLGYACEEHT VTTQDGYILG MQRIPAGKSG  1800
GXTGKRVPVL LQHGLLMDGI TWLLLPPGQS LAFLLADNGY EAYWEWSWDE LVAYDLPATF  1860
QYVCDQTRQK IHYIGHSLVN FTDSAAFFSS ANIXKSIGTL VVLAAISKDL QLKNLRSAVL  1920
LSPIAYADQM PSPLARAVAE NFIAEALYNA DLRQFNLKRK AAVEVLKAVC RKPGVDCTHW  1980
LTAFTVIRDG TVAMFDYXEE NMQHYGQPNP PVYSMTSIPD DLPLFLSYGG ADALSDIKDV  2040
KLLLKSLKNH DGDKLVLQYL DDYAHVDFVM GETAKQDVGH SCLDSSFASI HILTSNSNPA  2100
TTSALKKNGC NLAMESSVKK MISPWFQNHM KSALLLNEVS NVGYKDADEG GVKVDDCTCN  2160
NFVSIFSLIH EGASLSSISK TSPTSLXTDW NLLIRTSNCN VILRLASAKS NDGKGYLVQG  2220
TEVLKEVQFR TLKNTCKRTL AVGDPKQQIF HPFRNTTTIN WXENLQELSR NQSATSTAAF  2280
ANRWWRHKAT LAKNIKIPAG KSAGNETAAK LPVLLHHGIL MDASAWLLNS PDKALAFILA  2340
DNGFDVWLAN SRGTVSSRGH KTLTPLYPAY WDWSWDQLAA YDLPALFAYV NNQTGQKLHY  2400
VGHSLGTLTP LAAFSQGKLV NMLRSAALLA PIAYLGQMRS PFARTAVDAF LAQVQQILQY  2460
ICARPGSGCS NYLTATTVVT KGNIAMYDYV FPAINIQHYN QPTPPVYNME NIPKDVPLFL  2520
SYGGRDPLSN VLDVKYLLDN LRDHDKDKLV AQYTAEYAHM DFLMAENANQ VVYAPLLDFF  2580
KLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w6v_A6e-824279928732Protein argonaute-1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.113130.0bud| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-101C3H family protein