PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000285581
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 244aa    MW: 27094.7 Da    PI: 9.9
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000285581genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.74.7e-26165214251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                    ri+n++ rqvtfskRr+g++KKA+EL +LCdaev ++ifsstgk ye++s
  MDP0000285581 165 RIDNSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSTGKXYEFAS 214
                    8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.824156216IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-37156215IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-27157224IPR002100Transcription factor, MADS-box
CDDcd002651.15E-36157236No hitNo description
PRINTSPR004043.5E-27158178IPR002100Transcription factor, MADS-box
PfamPF003191.8E-24165212IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-27178193IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-27193214IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSFIGPVIED AKVFMSRITG VTTAQVCRQA NDLARRLANF LCMIXSLGLG LRNLQTFWPI  60
ILKFIDRVEF VRLVVXVVGG DDDGSGDDGG GXXGSDGAAT MLRVCWWRQY SGNDRGGSGD  120
REARVXRMVV VMAVXGVRLC GCNETLKQKE HKGADMGRGK IVIRRIDNST SRQVTFSKRR  180
KGLIKKAKEL AILCDAEVGL VIFSSTGKXY EFASNRTTLK EEIQIWKYKN NIGADLEIYI  240
TMQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-16156214159MEF2C
5f28_B2e-16156214159MEF2C
5f28_C2e-16156214159MEF2C
5f28_D2e-16156214159MEF2C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.14e-32AGAMOUS-like 21