PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000286846
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bZIP
Protein Properties Length: 448aa    MW: 48076.6 Da    PI: 7.4291
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000286846genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_166.54.5e-21345407163
                    XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                    e+elkr++rkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L++e+++++ +++ l se+
  MDP0000286846 345 ERELKRQKRKQSNRESARRSRLRKQAECDELAQRAEALKEENGTLRSEVNRIRSKYELLLSEN 407
                    89*******************************************************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.7E-30198IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.7E-47137299No hitNo description
Gene3DG3DSA:1.20.5.1702.9E-15341403No hitNo description
SMARTSM003381.8E-21345409IPR004827Basic-leucine zipper domain
PfamPF001706.3E-20345407IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.61347410IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.19E-10348404No hitNo description
CDDcd147025.65E-24350400No hitNo description
PROSITE patternPS000360352367IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MGSSEMDKPS KEKEKEAKTT PASTQEQSAT TSAGTVNPEW SGFQAYSPIP PHGFMASSPQ  60
AHPYMWGVQH IMPPYGTPPH PYVAMYPHGG LYAHPSMPPG SYPFSPFAMP TPNGIVEVSG  120
NIPGSMEADG KPSEVKDKLP IKRSKGSLGS LNMITGKNNE LGKTSGASAN GIYSKSAESA  180
SDGTSEGSDA NSQSDSQLKS GVRQDSLEGL IILFSEAVNL YLRDFTKNLY GLIAGNASQN  240
GSSAHGSQNG APNTHTVLNQ TMAVMPITAA GAPGVVPGPA TNLNIGMDYW GAPPSAAMPA  300
MRGKVPTTPV SAGIVTAGSR DSVQSQLWLQ SSSDMTFKLD WELDERELKR QKRKQSNRES  360
ARRSRLRKQA ECDELAQRAE ALKEENGTLR SEVNRIRSKY ELLLSENTSL KERLGEIPGH  420
EDVRSARSEP HLSNDTKQIA QTERHGGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1361367RRSRLRK
2361368RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.128180.0bud| cell culture| flower| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9518770.0KC951877.1 Pyrus pyrifolia bZIP protein (bZIP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008341061.10.0bZIP transcription factor 16-like
RefseqXP_008341062.10.0bZIP transcription factor 16-like
SwissprotQ501B21e-169BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A498HHU90.0A0A498HHU9_MALDO; Uncharacterized protein
STRINGXP_008341061.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40173256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-157basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]