PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000286960
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 306aa    MW: 35476.1 Da    PI: 7.6208
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000286960genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM39.31.9e-12858148
            NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevd...iykvePwdLp 48
                   lp+GfrF Ptdeelv++yL +kv  +++++++ i+e+d    y+ +P++L 
  MDP0000286960  8 LPVGFRFMPTDEELVTHYLMNKVLYRPVPAAQEIREIDaarFYSNHPKNLG 58
                   79*************************888776766653338999***995 PP
2NAM38.24.4e-1213321651128
            NAM  51 vkaeekewyfFskrdk.kyatgkrknr.atk..sgyWk.atgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                    ++ +e+ew+fF+++ + +ya+++r++  ++    g+Wk + g+++++++ +g+    k +L++++g +a+++++t+W m ey l
  MDP0000286960 133 FSCGEREWFFFIHQGEsSYASQTRSSIrVVGngLGFWKpKYGSETPICDDDGHFFASKISLTYFSGrSASHAKRTHWKMVEYYL 216
                    445789**9998876515666666654265534689**889***********************995678899*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-12357IPR003441NAC domain
PROSITE profilePS5100520.6778238IPR003441NAC domain
PfamPF023652.1E-149215IPR003441NAC domain
SuperFamilySSF1019413.01E-12132226IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MIIGLNQLPV GFRFMPTDEE LVTHYLMNKV LYRPVPAAQE IREIDAARFY SNHPKNLGMY  60
LFXIVIGSFR INSFVSQSLF STXGLKSGCI LFVGRIPXLX KCVCIYTIDI IYVLRHVIRS  120
DQIHELYVDR VTFSCGEREW FFFIHQGESS YASQTRSSIR VVGNGLGFWK PKYGSETPIC  180
DDDGHFFASK ISLTYFSGRS ASHAKRTHWK MVEYYLHEHD HVESNTEEKY QVADVHCDQR  240
GQDHMEFMKY TCEGLPMTFE YLHVALRALD KLSIALIRLF WHMSTAQHGS XDNNKHTKCS  300
TKCLXE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016651384.12e-34PREDICTED: NAC transcription factor 29-like
TrEMBLA0A498I5K01e-68A0A498I5K0_MALDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144391218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-07NAC domain containing protein 83