PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000287735

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

ZF-HD

Protein Properties

Length: 106aa MW: 11338.7 Da PI: 8.7947

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000287735	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	90.1	2.1e-28	44	100	2	59
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++vrY++ClkNhAas Ggh++ GCgEfmp g+e ++ +lkCaAC+CHRnFH +e + MDP0000287735 44 SRVRYRKCLKNHAASSGGHVLNGCGEFMPG-GDEDNSGSLKCAACECHRNFHIKEIDR 100 689************************9.7777****************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	5.0E-18	33	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.0E-26	46	98	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.6E-26	47	98	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.167	48	97	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
SRRDPDPTPT PVIVTPSAAT TIASRSNFKA PAAPPQLRPS TAASRVRYRK CLKNHAASSG 60 GHVLNGCGEF MPGGDEDNSG SLKCAACECH RNFHIKEIDR EHVSNN

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, flowers and inflorescence. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008392268.1	3e-52	zinc-finger homeodomain protein 6-like
Swissprot	Q9ZPW7	3e-22	ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBL	A0A498KE11	3e-55	A0A498KE11_MALDO; Uncharacterized protein
STRING	XP_008392268.1	1e-51	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18350.1	3e-24	homeobox protein 24

Link Out ? help Back to Top
Phytozome	MDP0000287735