PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000288624
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 328aa    MW: 36544.9 Da    PI: 6.7809
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000288624genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.82.2e-15666162
            NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFs 62
                   lpp f F Ptdeelv +yL +k +g+ +el e+i+evd+yk+eP+dLp + + ++++  fF 
  MDP0000288624  6 LPPXFIFYPTDEELVAYYLDRKXNGRXIEL-EIIPEVDLYKCEPRDLPGTERYGTERSEFFE 66
                   6899**************************.99***************43333444445554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-16368IPR003441NAC domain
PROSITE profilePS5100516.3566154IPR003441NAC domain
PfamPF023653.3E-5759IPR003441NAC domain
SMARTSM003200.03291131IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.4E-5597300IPR015943WD40/YVTN repeat-like-containing domain
CDDcd002003.82E-5497300No hitNo description
PfamPF004000.01897130IPR001680WD40 repeat
PROSITE profilePS5008210.44298140IPR001680WD40 repeat
SuperFamilySSF509783.21E-5398301IPR017986WD40-repeat-containing domain
PROSITE profilePS5029438.70598254IPR017986WD40-repeat-containing domain
PRINTSPR003203.2E-6118132IPR020472G-protein beta WD-40 repeat
SMARTSM003202.8E-5134173IPR001680WD40 repeat
PfamPF004003.1E-5138173IPR001680WD40 repeat
PROSITE profilePS5008215.388141182IPR001680WD40 repeat
PRINTSPR003203.2E-6160174IPR020472G-protein beta WD-40 repeat
SMARTSM003201.6E-9176215IPR001680WD40 repeat
PfamPF004003.6E-8178215IPR001680WD40 repeat
PROSITE profilePS5008214.986183224IPR001680WD40 repeat
PRINTSPR003203.2E-6202216IPR020472G-protein beta WD-40 repeat
SMARTSM003201.0E-7218257IPR001680WD40 repeat
PfamPF004001.0E-8221254IPR001680WD40 repeat
PROSITE profilePS5008210.709225254IPR001680WD40 repeat
SMARTSM003206.4271305IPR001680WD40 repeat
PfamPF004000.22273300IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAPMSLPPXF IFYPTDEELV AYYLDRKXNG RXIELEIIPE VDLYKCEPRD LPGTERYGTE  60
RSEFFEIRNG TTIITVLIIQ NNISHSSSLN LWCGSEEFVA HSAAVNCLKI GRKSSRVLVT  120
GGEDHKVNLW AIGKPNALLS LSGHTSGIDS VSFDSSEVLV AAGAASGTIK LWDLEEAKIV  180
RTLTGHRSNC ISVDFHPFGE FFASGSLDTN LKIWDIRKKG CIHTYKGHTR GVNAIRFTPD  240
GRWVVSCGED NTVKTTYKLK SIISQLWDLT AGKMLHDFKC HEGQVQCIDF HPHEFLLATG  300
LNLIDDNQKP YGYKKISGIT LAMTSCQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6hqa_B4e-2688300393647Subunit (90 kDa) of TFIID and SAGA complexes
6hqa_C4e-2688300393647Subunit (90 kDa) of TFIID and SAGA complexes
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay participate in a complex which severs microtubules in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028947765.11e-133katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1
RefseqXP_028947766.11e-133katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1
RefseqXP_028947767.11e-133katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1
RefseqXP_028947768.11e-133katanin p80 WD40 repeat-containing subunit B1 homolog isoform X2
RefseqXP_028947769.11e-133katanin p80 WD40 repeat-containing subunit B1 homolog isoform X3
SwissprotQ8H0T91e-121KTNB1_ARATH; Katanin p80 WD40 repeat-containing subunit B1 homolog
TrEMBLA0A498IAM21e-150A0A498IAM2_MALDO; Uncharacterized protein
STRINGXP_009351770.11e-131(Pyrus x bretschneideri)
STRINGXP_008340406.11e-131(Malus domestica)
STRINGXP_008350805.11e-137(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.14e-25NAC domain containing protein 20
Publications ? help Back to Top
  1. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  2. Zhang Y, et al.
    Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes.
    Plant Cell, 2008. 20(6): p. 1437-55
    [PMID:18552200]
  3. Mentzen WI,Wurtele ES
    Regulon organization of Arabidopsis.
    BMC Plant Biol., 2008. 8: p. 99
    [PMID:18826618]
  4. Wang C, et al.
    KTN80 confers precision to microtubule severing by specific targeting of katanin complexes in plant cells.
    EMBO J., 2017. 36(23): p. 3435-3447
    [PMID:28978669]