PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000288670
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 609aa    MW: 68343.1 Da    PI: 10.563
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000288670genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.92.3e-15398444455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn+ Er+RRdriN+++  L++l+P+a      K +Ka++L ++++Y+++Lq
  MDP0000288670 398 VHNQSERKRRDRINQKMKALQRLVPNA-----SKTDKASMLDEVIKYLQQLQ 444
                    6*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037638.0E-24111209IPR005516Remorin, C-terminal
Gene3DG3DSA:4.10.280.101.2E-17393456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.485394443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-18397467IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-13398444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.41E-13399448No hitNo description
SMARTSM003534.9E-17400449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MSHYTDAQDI ELATAVASAA FAIHSNEEPK LQYRKGTRES IPIPRTKSLQ DMTTGRPNKE  60
TRNNDEVSRK KSMDQRELPS RYPNRASSSR PSTPGNGYQN QRGSSVGRND VETKPDAWER  120
AQMKKIQRRY EKVKATIVAW ENEKKMQAKA KMERRKNEIE QRRARNMQHY QIKQARIDQI  180
AGGARAQAEE KRRNEESKVK EKAKRIRSNY DVTELKSKNG RLGMHGLGGL LPTAQAKPIW  240
SRSRACDTLE SIVDQATCHK RDPNIIHHDQ TPANISSMIA SSGETWTDSS VQVPPAQGWI  300
RKRTRSDSGF FENNFSSKTN NIHEEHADPS RVRLCRDNDT TMSTLVSFES PPSLKTKSIE  360
EDSACHGGLK NRDDGRETTK GGKSSRSHST RPRRAAAVHN QSERKRRDRI NQKMKALQRL  420
VPNASKTDKA SMLDEVIKYL QQLQAQVQMM HSMRNFMPNG HMNMNMMMPL EIQQQQQQHL  480
HQMSLLAHMG MGTGTGTRIH PTPVVAATPP FMPPFMMPPL MPPHHPPQAK PEPTGTNNGS  540
DPLSDPYCSL LAQQSMNMDL FNRMAALYRQ QVTPATAASS SPSQSNQTAM GGAGGNGKPA  600
MVPECSLQA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1402407ERKRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008374594.10.0transcription factor PIF7-like isoform X2
TrEMBLA0A498JTC90.0A0A498JTC9_MALDO; Uncharacterized protein
STRINGXP_008374594.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129992432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.15e-30bHLH family protein