PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000288687
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 416aa    MW: 45570.1 Da    PI: 6.7726
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000288687genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.4e-181154146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     + +WT eE++ l +a++++G++ W+ Ia+ ++ gRt++ +k++w++
    MDP0000288687 11 KEAWTLEEELALMKAHQMHGNK-WAEIAKVLP-GRTDNAIKNHWNS 54
                     579*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.99E-20162IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-24160IPR009057Homeodomain-like
PROSITE profilePS5129427.864660IPR017930Myb domain
SMARTSM007171.3E-161058IPR001005SANT/Myb domain
PfamPF002492.3E-161154IPR001005SANT/Myb domain
CDDcd001673.87E-131356No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
WHNHLNPDIK KEAWTLEEEL ALMKAHQMHG NKWAEIAKVL PGRTDNAIKN HWNSSLKKKL  60
DFYLATGKLP PPPKYGAKEP RSNATKKILV RSTKGSDSTA QTSSGNADMS KLDEDGKDQF  120
ESAAPPQDMG ASSSVHPNEC ADSEGVECDL RLSFMDLSCS NSDSGPKFDN FGVKRKPQIE  180
NSVSNGRAES ENCGFSNQMD EDSVKTTSFP FETPRYGSLY YEPPPLESSV QFNSGFSSMH  240
RLQNDYTSSP NLSPISFFTP PCVKGSGLCN QSPESILKIA AKTFPNTPSI LRKRKTIGQG  300
XXPCXKVAVV DCESVREMLN VSSEHKNSAE VSGSQDGSLC ESPTSNGTLG QWKAFNASPP  360
YRLRARRTAV FKSVEKQLEF TCDEEYDANS MSVELSANGG SAVIKDCTHP TKMAVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2516149109B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.159980.0bud| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0744600.0DQ074460.1 Malus x domestica MYB4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028945348.10.0transcription factor MYB51-like isoform X1
TrEMBLA0A498IEH10.0A0A498IEH1_MALDO; Uncharacterized protein
STRINGXP_008366798.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66163449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.24e-74myb domain protein 3r-5
Publications ? help Back to Top
  1. Hellens RP, et al.
    Transient expression vectors for functional genomics, quantification of promoter activity and RNA silencing in plants.
    Plant Methods, 2005. 1: p. 13
    [PMID:16359558]