PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000288808
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 667aa    MW: 76528.5 Da    PI: 7.7842
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000288808genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B397.67.9e-31110214199
                    EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 
                    f+kv tpsdv+k++rlv+pk++ae++    ++++ ++  l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + 
  MDP0000288808 110 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSSNDKGLLLNFQDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFERGvGExGKD 205
                    89***************************9555568889************************************************665888999 PP

                    ..EEEEE-S CS
             B3  91 elvvkvfrk 99 
                    +l++ ++r+
  MDP0000288808 206 RLYIDWRRR 214
                    999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.7E-42104224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.55E-30106215IPR015300DNA-binding pseudobarrel domain
CDDcd100177.30E-24108197No hitNo description
PROSITE profilePS5086314.706110215IPR003340B3 DNA binding domain
SMARTSM010199.3E-24110215IPR003340B3 DNA binding domain
PfamPF023622.8E-28110214IPR003340B3 DNA binding domain
PfamPF041614.4E-17507635IPR007290Arv1 protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MDFMQRDQKG YSDKEDQDQE QEDQEEEEDI ITTSNSNYGS SPKYKGILLP PPPPHYHQQY  60
GRQKPWLDVQ NHGSPEAINF TDLSLNKDQV SDGGTDQNYW PPNSEREHMF DKVVTPSDVG  120
KLNRLVIPKQ HAERYFPLDS SSNDKGLLLN FQDRTGKPWR FRYSYWNSSQ SYVMTKGWSR  180
FVKEKKLDAG DIVSFERGVG EXGKDRLYID WRRRPPPPLP PQLHPHNHYG GGRVYSLLQX  240
PLPSSVMSSM PLRHHEHFLH SNNNVHHPYH HQHHNYQLMN QQYLPHQLHQ LQGGGDQHVI  300
HHQYPMVIDS VPFYQHGNYK NSATSTSNSA SASVASSAGK KLRLFGVNME CSSSPIEEDD  360
HHECQILSST AIPYQPHLPS STSSLAFPPL EFIRLPNTTA ANQIRHPLQV RLGAXSSLML  420
KRFIEHLMND INRICGVLSM XPVKICLAXF HCYNINPSRV TKQDCGAGHE KSGLWLIVFT  480
AAVTLICSQL LLSFLINFNL DKGHWAAYES KNPKLLGNCK AVADEYIECE PIIILIDLIL  540
HKTKAYTHLL YNVIDPQAPS FQESLFGKKQ GRMGLVHELR LXTLEISKDG LRILAFQFPI  600
NKKKMFRFQM LMDIVFGNIM FLSTFLLAMR ILFSTFPRPL SFAVGFFSKQ LQVDRREWTM  660
VEDSLAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-661042152114B3 domain-containing transcription factor NGA1
5os9_B2e-661042152114B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.265540.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008359085.20.0B3 domain-containing transcription factor NGA1
RefseqXP_008359143.20.0B3 domain-containing transcription factor NGA1
RefseqXP_008359205.20.0B3 domain-containing transcription factor NGA1
RefseqXP_008359274.20.0B3 domain-containing transcription factor NGA1
RefseqXP_017187959.20.0B3 domain-containing transcription factor NGA1
TrEMBLA0A498KPF40.0A0A498KPF4_MALDO; Uncharacterized protein
STRINGXP_008359085.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-61B3 family protein