PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000288971
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 276aa    MW: 31192.9 Da    PI: 5.0507
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000288971genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS412.9e-13204269306374
           GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    +er e++ +Wr++l++aGF++  l+   ++qa+++l+ ++ dgy++ +e+g+ +l Wk+rp + +SaW+
  MDP0000288971 204 IERPERADQWRRQLGRAGFQETVLK--CTSQARMMLSVYGCDGYTLASEKGC-FLRWKGRPKILASAWQ 269
                    79******************99996..689******************9998.59*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.0E-10204269IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MPAYTIVTYE KKDCTYVGKG YFRKYNLVQV NYTKPLKPRV VGVDVKALHA CLLPRSTNLS  60
TASSTWIIAF ALVIMTFNPW RNNKVVVVVV AALSIEYFDQ DGIEIFSMVD DLYGDVLIMM  120
EEEEDHVDMS GPVGDLPGLV EDHNPFELED GMRALMEEAT SLGMLTEFNL ISEPVTPSLL  180
TRENLDLREG EALFINSIMH LRTIERPERA DQWRRQLGRA GFQETVLKCT SQARMMLSVY  240
GCDGYTLASE KGCFLRWKGR PKILASAWQA RSLSSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008372004.26e-33DELLA protein RGL1-like
TrEMBLA0A314Z4Z13e-30A0A314Z4Z1_PRUYE; DELLA protein RGL1-like
STRINGXP_008372004.12e-32(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2555633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-10RGA-like 1