PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000289385
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 202aa    MW: 23359.9 Da    PI: 9.6125
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000289385genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.42.3e-1241130182
                    EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT.-EEEE CS
             B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg.DfvvF 82 
                    f+k+lt+sdv    +rl+++k+ +e+h       g+++++++ +t++d +g+++ + ++ + ++   vlt+GW++F ++ gL e+ Dfv+ 
  MDP0000289385  41 FEKQLTSSDVRDDqSRLSMSKEDVENHifplfkdGEDPNQGVHVTIYDMDGKEYPMVFKTWMSKI-NVLTGGWNSFRQDRGLVEKiDFVTV 130
                    99********98779*******************9999********************8888874.68**************854377765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023623.8E-941131IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-1441135IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-1341145No hitNo description
SMARTSM010191.3E-541149IPR003340B3 DNA binding domain
SuperFamilySSF1019367.26E-1541135IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MMLGEPQLHG IQGLFYGNYA PPDLPPVPSL RPLIQVHSKP FEKQLTSSDV RDDQSRLSMS  60
KEDVENHIFP LFKDGEDPNQ GVHVTIYDMD GKEYPMVFKT WMSKINVLTG GWNSFRQDRG  120
LVEKIDFVTV WVFRNVLNGS LCFAINSRRF PAVSEAIKRR KRQYRDSGPP LQEPPYTIHH  180
MKETSVPVRL LTLLPIRRVI ER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017182490.11e-126putative B3 domain-containing protein At4g03170
TrEMBLA0A498HTH41e-116A0A498HTH4_MALDO; Uncharacterized protein
STRINGXP_009376601.11e-115(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.13e-30B3 family protein