PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000289642
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 639aa    MW: 70674.5 Da    PI: 8.4754
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000289642genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88e-133313711055
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +rRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  MDP0000289642 331 QRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 371
                    7*******************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.7E-17315378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16315387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.20E-14320375No hitNo description
PROSITE profilePS5088814.71321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14323376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-10331371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MNGCVPDFEM DDDYSLPTSS ALNRPRKSTM PEDDVMELLW QNGQVVMQNQ NQRSAVNSKR  60
SHQSKYDVVL PDDGXGITRP AXQPQPQAQN PHLFVQEDEM ASWLQYPLVD DPFSADLLYP  120
DSTTSELRQL QVSAPPPASR LPIHTPRRTE VQNFLHFARP NNNNASSNRP MIKEMXPSGS  180
KKSVVRETMT VVDSSDTXLV GPSSRALDSR PDGAGGGLAN GATSFPTTAT AGTSFPAKEV  240
CEMSLTSSPG GSSASASASA EPMSAXKPPP TAXNRKRKGR EVAAADDAEI QSEDVEFESA  300
NGKKQVRGST SSTKRSRAAE VHNLSERISV QRRRDRINEK MKALQELIPR CNKSDKASML  360
DEAIEYLKSL QLQVQMVSMG CGMVPMMFPG VQQMMSMPMG MGIGMGMGMG MEMAGINRPM  420
MPFPNVISGS PMPTAAAHMG PRFPIPPFHM QPIPASDPTR VPAVNQTDHM VNSLGAQNPN  480
QSRMPNFADP YQQFFGPQQM QLPLQQNQAM PQPTTGKPSS SRGPETHENH QSEWACSCYV  540
VTLTRWILRH SLWLKTRRSK IVLEXDISRC ILKDMEGDGD RSFWVSFSAF RKSRRAIAGK  600
DEQKVEDRIL KVLESFREMD KLRISDVPAK IIRHIALTT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.49200.0bud| leaf| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU2558590.0KU255859.1 Malus domestica phytochrome-interacting factor (PIF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008382659.20.0transcription factor PIF1
TrEMBLA0A172QE430.0A0A172QE43_MALDO; Phytochrome-interacting factor
STRINGXP_008382659.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.31e-65phytochrome interacting factor 3-like 5