PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000289768
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 166aa    MW: 18683.5 Da    PI: 8.8116
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000289768genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.5e-151890148
                     TSSS-HHHHHHHHHHHHHTTTT..........................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..........................tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEde+l+ +++++G                            +W++Ia+ ++ g t++++k++w+++l
    MDP0000289768 18 KGPWTHEEDEILISYIQKYGHAnwralpkqagesntxkrdhipakncgSWSAIASSLP-GXTDNEIKNFWHSHL 90
                     79******************99************************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-14950IPR009057Homeodomain-like
PROSITE profilePS5129413.2771394IPR017930Myb domain
SMARTSM007175.2E-151792IPR001005SANT/Myb domain
SuperFamilySSF466891.21E-131891IPR009057Homeodomain-like
PfamPF002493.8E-81849IPR001005SANT/Myb domain
CDDcd001677.44E-102090No hitNo description
Gene3DG3DSA:1.10.10.602.8E-106591IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MVRAPAPSPC CEKMGMKKGP WTHEEDEILI SYIQKYGHAN WRALPKQAGE SNTXKRDHIP  60
AKNCGSWSAI ASSLPGXTDN EIKNFWHSHL KKRSRTYFRL DDYDQQKHFS SKSTFPVPGL  120
IHEPPSSSNP AVPIPNNDGS KTSIEDIDFW YNLFMKAGEA PKSSTA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028957401.11e-101transcription factor MYB4-like
SwissprotQ7XBH42e-29MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A498K1K31e-103A0A498K1K3_MALDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-31myb domain protein 15
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]