PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000289783
Common NameLOC103422723, SCL11
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 661aa    MW: 75261.1 Da    PI: 6.912
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000289783genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3827e-1172896573372
           GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                    + L++cA+av+s d++ a++l++++++++sp+g++++Rla yf++AL+arla+s +  y+ l + +t+    +e l+a++++   +P++k+ ++ a
  MDP0000289783 289 TMLTQCAQAVASYDQQTASELIKKIRKHSSPYGEATERLAYYFANALEARLAGSRTPSYSPLLSPQTP---ATEILKAHQVYITSCPFMKMMYFFA 381
                    689**************************************************999999999777777...89*********************** PP

           GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    N++I++ +e+++r+HiiDf+is+G+QWp+L+q L++R +gpp+lR T+++ p++g   +e++eet +rL+k+A+++ vpfe+nv +a+++e++++e
  MDP0000289783 382 NRTIMKLAENATRLHIIDFGISYGFQWPCLIQRLSERCGGPPNLRFTAIELPQPGfrPTERVEETMRRLEKYAKRFVVPFEYNV-IAQKWETIRFE 476
                    ******************************************************9****************************9.7********** PP

           GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                    +L+v+++E ++Vn++ +l +++de+v ++s+rd+vL+l+k+++P+++++   +  +ns+ F++rf eal +ys+lfd++ea++pre+e+r + E +
  MDP0000289783 477 DLKVDRNELTVVNCMRRLRHIPDETVVMSSPRDTVLNLIKKINPDLFIHGVVNGTYNSPFFVKRFREALFHYSSLFDMFEATIPREDEHRLMFEGA 572
                    ************************************************************************************************ PP

           GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372
                    + gr+i+nv+aceg er+er et+++W+ r ++aGFk+vpl+++ + ++k++l+ +   + +r++e+ +++++gWk+r ++++Sa
  MDP0000289783 573 VYGRDIMNVIACEGIERVERPETYKHWQVRYQRAGFKQVPLDQELMRKVKAMLKLMRyHNDFRIDEDGHWMLQGWKGRIVMALSA 657
                    ******************************************************9999999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.379261638IPR005202Transcription factor GRAS
PfamPF035142.4E-114289657IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MERFTVGQGS NQNLGNHEST NPIFLPTNLD HNHSDSSSSQ NLVNGFQVNH EPTNTLFLPP  60
NSDHPSESEF SSSGSDGDTF DISVCNHPVL KYISDILLEE DLEGKPCMLQ DCLALQAAEK  120
SFYDVLKPKG PSSSQSPLPV DRSFENSDDD FKESCHISIG CVAARTDSVS GSEISHIQSC  180
PVESSSDAYN STYRLKSKKN HLREDGDYTE EGRSNKQSAA SADGPEPQEM FDEVLLYKDA  240
RRAFESCSDD QSVKTDGSGK LKCNKQPKVS KAARSKTKNK NREVVDLCTM LTQCAQAVAS  300
YDQQTASELI KKIRKHSSPY GEATERLAYY FANALEARLA GSRTPSYSPL LSPQTPATEI  360
LKAHQVYITS CPFMKMMYFF ANRTIMKLAE NATRLHIIDF GISYGFQWPC LIQRLSERCG  420
GPPNLRFTAI ELPQPGFRPT ERVEETMRRL EKYAKRFVVP FEYNVIAQKW ETIRFEDLKV  480
DRNELTVVNC MRRLRHIPDE TVVMSSPRDT VLNLIKKINP DLFIHGVVNG TYNSPFFVKR  540
FREALFHYSS LFDMFEATIP REDEHRLMFE GAVYGRDIMN VIACEGIERV ERPETYKHWQ  600
VRYQRAGFKQ VPLDQELMRK VKAMLKLMRY HNDFRIDEDG HWMLQGWKGR IVMALSALKP  660
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-472766607379Protein SCARECROW
5b3h_D5e-472766607379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.269250.0leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008384946.10.0scarecrow-like protein 30
RefseqXP_008384948.10.0scarecrow-like protein 30
TrEMBLD9ZJB10.0D9ZJB1_MALDO; SCL domain class transcription factor
STRINGXP_008359007.10.0(Malus domestica)
STRINGXP_008384946.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.11e-176GRAS family protein