PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000289836
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 286aa    MW: 33399.6 Da    PI: 9.399
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000289836genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.46.2e-31959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   krienk+nrqvtfskRr g++KKA+E+SvLCdaeva+iifs++gkl+eys+
  MDP0000289836  9 KRIENKINRQVTFSKRRSGLMKKAHEISVLCDAEVALIIFSTKGKLFEYSN 59
                   79***********************************************95 PP
2K-box108.85.9e-361102055100
          K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                    +  +++++ + s++ e+akLk+++e Lqr+qRh++GedL+sLslkeLq+LeqqL+++lk+iRs+Kn++++e+i+elqkk k+lqe+n+ L kk++e
  MDP0000289836 110 QLLANDNESTGSWTLEHAKLKARVEVLQRNQRHYMGEDLQSLSLKELQNLEQQLDSALKHIRSRKNQVMYESISELQKKDKALQEQNNLLAKKVKE 205
                    55556788899**********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.8E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.282161IPR002100Transcription factor, MADS-box
CDDcd002658.34E-36273No hitNo description
SuperFamilySSF554553.53E-29264IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-31323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-313859IPR002100Transcription factor, MADS-box
PfamPF014862.5E-29118203IPR002487Transcription factor, K-box
PROSITE profilePS5129717.305119209IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLMK KAHEISVLCD AEVALIIFST KGKLFEYSND  60
SCVPLKENDV CEREREXEYI FLRVYDKIFR INSMERILER YERYSYTERQ LLANDNESTG  120
SWTLEHAKLK ARVEVLQRNQ RHYMGEDLQS LSLKELQNLE QQLDSALKHI RSRKNQVMYE  180
SISELQKKDK ALQEQNNLLA KKVKEKENAV AQQAQLEHVQ EQRLNSSSSL LPRALQSLNF  240
GSGSNYQAIR SSEGIPGDNQ QYGDETPTPH RPNMLLPAWM LRHLNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-19159159MEF2C
5f28_B1e-19159159MEF2C
5f28_C1e-19159159MEF2C
5f28_D1e-19159159MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.29400.0bud| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of tuberization. {ECO:0000269|PubMed:8756601}.
UniprotTISSUE SPECIFICITY: Abundant in vegetative organs. {ECO:0000269|PubMed:8543185}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankMDU789480.0U78948.1 Malus domestica MADS-box protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393256.10.0truncated transcription factor CAULIFLOWER A-like isoform X1
SwissprotQ424291e-113AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLQ283Q10.0Q283Q1_MALDO; MdMads2.1 protein
STRINGXP_008393256.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.13e-92AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]