PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000290148
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GeBP
Protein Properties Length: 486aa    MW: 55208.4 Da    PI: 5.0404
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000290148genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57383.92.3e-26123224497
         DUF573   4 qrlwseeDeivlLqGlidfkaktgk....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifel 91 
                    +r+ws+eDe+ lL+G++d+ +++++       + +  fye +k +++++  k+ +veK+rrLK+K+++ vkk     +sgke++f++ hd+ +fel
  MDP0000290148 123 KRVWSKEDELELLRGFLDYYSTRKTritkATAKXTALFYEEIKPRLKLECGKTKMVEKLRRLKRKYHNVVKKmneiNSSGKEFRFKNXHDNAVFEL 218
                    89*****************888888555444558889*********************************998887789***************** PP

         DUF573  92 skkiWg 97 
                    s+kiW+
  MDP0000290148 219 SHKIWN 224
                    *****7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.0E-25123224IPR007592Protein of unknown function DUF573
SuperFamilySSF578024.04E-20387453No hitNo description
Gene3DG3DSA:2.20.28.102.6E-21387440IPR004039Rubredoxin-type fold
PROSITE profilePS5090313.486388439IPR024934Rubredoxin-like domain
PRINTSPR001633.6E-8390406IPR024935Rubredoxin domain
CDDcd007301.59E-19391437IPR024935Rubredoxin domain
PfamPF003011.5E-16391433IPR024935Rubredoxin domain
PROSITE patternPS002020420430IPR018527Rubredoxin, iron-binding site
PRINTSPR001633.6E-8420436IPR024935Rubredoxin domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005506Molecular Functioniron ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MAWRPLLSWI MSSSSSSSSS SYSSSEYESD XDXDICRHDP GNNNVRQAQK GHDVDDHEDD  60
DDENDVSYEP HEAEDEDEVE EPKXSSTSDY SFTIXEPRAK RRRIDXANEA LTSVQEEKKR  120
RGKRVWSKED ELELLRGFLD YYSTRKTRIT KATAKXTALF YEEIKPRLKL ECGKTKMVEK  180
LRRLKRKYHN VVKKMNEINS SGKEFRFKNX HDNAVFELSH KIWNVEKTRN NCVVESHNNN  240
VMVKREEDNV AASSSVADHE RPTXSFDENN NVTNVDDNMN NGHDVRGLIV GLAMNPMPLS  300
LRGKMGSGGG SGVGEVVEDE KWRQQQILEL KAYEKRLDLV QHQEDKPTSE EPTSPPPASS  360
VDPVEPAEEL ETKFDKRRLE EKFAVLNTGV YECRSCGYKY DEAMGDPSYP VPPGLPFDKL  420
PEDWRCPTCG AAQGFFVSKS VEIAGFAQNQ QFGLGGNTLT SGQKAVLIFG GLFLFFVLFL  480
SGYFLQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199103KRRRI
2100120RRRIDXANEALTSVQEEKKRR
3117122KKRRGK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008350774.20.0probable transcription factor At5g28040
TrEMBLA0A498ILS20.0A0A498ILS2_MALDO; Uncharacterized protein
STRINGXP_008350774.10.0(Malus domestica)
STRINGXP_008388653.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1067322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.22e-26DNA-binding storekeeper protein-related transcriptional regulator