PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000291592
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 241aa    MW: 27419.4 Da    PI: 9.8145
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000291592genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3512.7e-166702897
                   --..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
             B3 28 gkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                   g +++  + tl+ +sg+sW+v l   +k+g+++++kGW++Fv ++ L+ g f+vF++dg+++f   vk++
  MDP0000291592  6 GRPPC--KCTLRGPSGESWTVGLE-GRKDGKFFFRKGWRHFVGDHLLEIGNFLVFEYDGNTNF--EVKIY 70
                   55555..689*************3.455556***************************99999..77765 PP
2B3482.2e-15127219999
                    HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3   9 dvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                    dv+k+  r+++pk+ a + g++k+e   ++l d++g+sW+vkl+    + +sg+  +t+G     +an++  gD+vvF+l+++++ e+++++fr+
  MDP0000291592 127 DVSKNpYRMTVPKELAVAVGLIKKE--RVRLIDPNGKSWKVKLRLddtKYGSGHLRMTEGLIACWRANNISPGDTVVFELVNKKRSEMKIHFFRA 219
                    66666679************99776..6***************9998566666699*************************999999*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.719173IPR003340B3 DNA binding domain
SMARTSM010192.8E-4173IPR003340B3 DNA binding domain
CDDcd100175.02E-16271No hitNo description
SuperFamilySSF1019364.71E-18375IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-18375IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-13570IPR003340B3 DNA binding domain
PROSITE profilePS5086310.475120220IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-14123220IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.2E-6124220IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-13125218IPR015300DNA-binding pseudobarrel domain
PfamPF023622.5E-12127219IPR003340B3 DNA binding domain
CDDcd100172.16E-12133218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MENFNGRPPC KCTLRGPSGE SWTVGLEGRK DGKFFFRKGW RHFVGDHLLE IGNFLVFEYD  60
GNTNFEVKIY NPTGCEKEEA AAAKNTTGNQ ASIRNRKKSM LYKPADVKET SDGLIMFRSK  120
YTCFERDVSK NPYRMTVPKE LAVAVGLIKK ERVRLIDPNG KSWKVKLRLD DTKYGSGHLR  180
MTEGLIACWR ANNISPGDTV VFELVNKKRS EMKIHFFRAE AGGKRPCLVL ERDASDPDVE  240
N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008380674.11e-142B3 domain-containing protein Os12g0591400-like
RefseqXP_008380675.11e-142B3 domain-containing protein Os12g0591400-like
TrEMBLA0A498K3421e-176A0A498K342_MALDO; Uncharacterized protein
STRINGXP_008380676.11e-179(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.19e-16B3 family protein