PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000292449
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CPP
Protein Properties Length: 811aa    MW: 88990 Da    PI: 5.4195
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000292449genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.77.5e-16518556240
            TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                    ++k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk 
  MDP0000292449 518 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKP 556
                    689**********************************96 PP
2TCR50.83.3e-16603642140
            TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                    ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN+ 
  MDP0000292449 603 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNTF 642
                    589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.6E-17517558IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.903518643IPR005172CRC domain
PfamPF036381.6E-11520555IPR005172CRC domain
SMARTSM011141.3E-17603644IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.0E-11605641IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 811 aa     Download sequence    Send to blast
MDTPERNQIG TPKAKFEDSP VFNYINSLSP IKPVKSVHIT QTFSSLXFAS LPSVFTSPHV  60
SSHKXSRFLR GHNPSDPSKS ESSLESGNKV STNEDAAELC XNSAELHEDC VPGDSIGEAS  120
VEPRNEHSKF VIELPRNLKY DCGSPECGAT TRCGTEAGCE SEVADLSAPL VPYVQKTSEN  180
GSSDDGAHLQ NICQSEQRNE LTGCDWESLI SGASDLLIFD SPNGSEAFRG IMQNPLDSVT  240
RFCNSLMPRL SQNETADEQN VLVLDTIVSG EQPETEDPSS QYGEASQPED TELMQDHLNS  300
CMVSSQIEKE DNNLEAPMQF NCKPGLNLHR GLRRRCLDFE MVGARRKSLD NVPNSSSSML  360
SQSDEKXTTN DKQLVPMKPG GESSRCILPG IGLHLNALAT TSKDYKTIKR ENMAYGRQLS  420
LPNLTAPANS PTAGQGPGHE SFSSASSERD MDGTENGVQL LQDASQEPAF LANEEFNQNS  480
PKKKRHVLLT RYSSXNYYVI FIFIFVPKFE QAGETESSCK RCNCKKSKCL KLYCECFAAG  540
VYCIEPCSCQ ECFNKPIHED TVLATRKQIE SRNPLAFAPK VIRNADPVPE YGEESSKTPA  600
SARHKRGCNC KKSSCLKKYC ECYQGGVGCS ISCRCEGCKN TFGRKDGSFM LTETEADEEE  660
AEACGKSVAE NHQQKNEIQE NEEQHQDSAL PTTPLRLSRQ LVSLPFSSKN KPPRSSVFSI  720
GSSSGLYTSQ KLGILCPETK FERHIQAVPE DEMPEILQGD GSPSTGIKTA SPNGKRVCPP  780
NREFAPSPGR RAGRKLILQS IPSFPSLTPQ N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-1752264014120Protein lin-54 homolog
5fd3_B5e-1752264014120Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008390995.20.0protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLA0A498HL320.0A0A498HL32_MALDO; Uncharacterized protein
STRINGXP_008390995.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-152TESMIN/TSO1-like CXC 2