PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000293200
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WOX
Protein Properties Length: 237aa    MW: 27175.8 Da    PI: 8.684
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000293200genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.27.7e-201069357
                   --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   +R+++t+eql  Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  MDP0000293200 10 SRWCPTPEQLMLLEEMYRAgIRTPNASQIQHITAQLsfygKIEGKNVFYWFQNHKARDRQ 69
                   8*****************99*************************************996 PP
2Wus_type_Homeobox117.85e-38870264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       +++RW+PtpeQ+++Lee+y++G+rtPn+++iq+ita+L+ yGkie+kNVfyWFQN+kaR+rqk
      MDP0000293200  8 SSSRWCPTPEQLMLLEEMYRAGIRTPNASQIQHITAQLSFYGKIEGKNVFYWFQNHKARDRQK 70
                       689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.479570IPR001356Homeobox domain
SMARTSM003896.0E-5774IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-71069IPR009057Homeodomain-like
SuperFamilySSF466892.78E-111069IPR009057Homeodomain-like
PfamPF000461.7E-171069IPR001356Homeobox domain
CDDcd000862.35E-51170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MSPAANSSSS RWCPTPEQLM LLEEMYRAGI RTPNASQIQH ITAQLSFYGK IEGKNVFYWF  60
QNHKARDRQK LRRKLCKQLQ QQQLLYHHHN NHNYPNYHYH QQLNQQSFLG YLESPPPASS  120
ALHHPQLSTC HHHDNYSSXG FLPPQVGVED ALINYTWXMT IPEKVEMEKS VMSMHGRDWM  180
MNVGPPSPCC TSTRSTATTS RPPLKTLQLF PTTAANLKEE STPSYNAPSS SSXTDNY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008385208.21e-177WUSCHEL-related homeobox 3-like
TrEMBLA0A498IQP41e-175A0A498IQP4_MALDO; Uncharacterized protein
STRINGXP_008385208.11e-176(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106322940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.14e-41WOX family protein