PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000293847

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bZIP

Protein Properties

Length: 454aa MW: 48585.9 Da PI: 6.3479

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000293847	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.5	7.8e-10	254	302	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l + MDP0000293847 254 KRAKRILANRQSAARSKERKSRYIQELERKVQTLQTEATTLSAQLTLFQ 302 9****************************************99887655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.2E-15	250	314	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.841	252	315	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-10	254	305	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.5E-10	254	308	No hit	No description
Pfam	PF00170	1.8E-8	254	302	IPR004827	Basic-leucine zipper domain
CDD	cd14703	6.55E-24	255	304	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MDGHGISCLV IGSSGYTCDH TNIVTKLWMI VSTYTXANSF PMQLXMPPPN GIYAWGGSVG 60 IDGNANASGL AAAATSSSST SFTTSTSLSL ATMLGNSASP FIREDADGSH HDHNHDVSHR 120 RANSEVSFRL PKDMMDLPAA AGDPFNGGSS TPSLEEMGSE EDLFSTYIDL DKLGGSNNSS 180 DQNSGGNDGP DGGPNGNAGG GEGGGGGEKR PSRHRYSSSV DGSSTSTGLF GEVMEAKKAM 240 PPDKLAELWT LDPKRAKRIL ANRQSAARSK ERKSRYIQEL ERKVQTLQTE ATTLSAQLTL 300 FQRDTTGLST ENTELKLRLQ SMEQQAQSRD XLNEALKKEV ERLKIATGER MSPSDSFNLG 360 MHQMPYNHPS AYFPLQQQPG PASHQTMQLR QFNHSQSNMP TQHLHQSNSH TLLSDMLQNG 420 PVGQLQGLDI GSKGAPIGKS EGPSLSASEK GSPF

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MDGHGISCLV IGSSGYTCDH TNIVTKLWMI VSTYTXANSF PMQLXMPPPN GIYAWGGSVG  60
IDGNANASGL AAAATSSSST SFTTSTSLSL ATMLGNSASP FIREDADGSH HDHNHDVSHR  120
RANSEVSFRL PKDMMDLPAA AGDPFNGGSS TPSLEEMGSE EDLFSTYIDL DKLGGSNNSS  180
DQNSGGNDGP DGGPNGNAGG GEGGGGGEKR PSRHRYSSSV DGSSTSTGLF GEVMEAKKAM  240
PPDKLAELWT LDPKRAKRIL ANRQSAARSK ERKSRYIQEL ERKVQTLQTE ATTLSAQLTL  300
FQRDTTGLST ENTELKLRLQ SMEQQAQSRD XLNEALKKEV ERLKIATGER MSPSDSFNLG  360
MHQMPYNHPS AYFPLQQQPG PASHQTMQLR QFNHSQSNMP TQHLHQSNSH TLLSDMLQNG  420
PVGQLQGLDI GSKGAPIGKS EGPSLSASEK GSPF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.16536	1e-150	bud\| flower\| fruit\| leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269\|PubMed:27896439}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009354848.1	0.0	PREDICTED: transcription factor RF2b-like
Swissprot	O22873	2e-93	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A498KEV1	0.0	A0A498KEV1_MALDO; Uncharacterized protein
STRING	XP_008344762.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	2e-83	bZIP family protein

Link Out ? help Back to Top
Phytozome	MDP0000293847

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]