PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000294251
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ARF
Protein Properties Length: 700aa    MW: 79593.9 Da    PI: 6.6973
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000294251genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.54e-21448535183
                    EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                    f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F 
  MDP0000294251 448 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSLQPPA-QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 535
                    99*****************************9777666.49**********************************************96 PP
2Auxin_resp90.23.6e-305766421883
     Auxin_resp  18 rastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    ras+seFv++++k+ ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  MDP0000294251 576 RASPSEFVIPLSKYIKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 642
                    99**************986599******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-41432542IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-34441549IPR015300DNA-binding pseudobarrel domain
CDDcd100172.57E-20447546No hitNo description
SMARTSM010191.5E-19448554IPR003340B3 DNA binding domain
PROSITE profilePS5086310.419448551IPR003340B3 DNA binding domain
PfamPF023621.7E-19448537IPR003340B3 DNA binding domain
PfamPF065073.8E-25575642IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MEGKGRHGNQ EPGDLRVERD DEIQELRQEI ELLALRIERL EARRKHDARS CTVRCESDKV  60
NPNTYQNEQM VMPKVPDLKV TPLVSLIFEN EFDNDELGYT YDCTLPPIYD EYHEDGDXCP  120
KKEVTDESLH HNKLGYSSID ISHASESISL HNFMSCSKGD PEAKGFANPS SGSNDVFLEH  180
GRDGTMSADL IPCNIISLDA SNITNYTTYL PTVEEKVPNF QFYDSIWYDF IYGSINNYLN  240
ARKELIMILK PYIFREKLCR LLQFWERMNL CFCHARPLKY GGTWILSHQS HIERSRFTGT  300
DPWTAMMGGS RIAPRLSLLL STSGLGQQDH EGGGGLEKKC LNSELWHACA GPLVSLPTPG  360
TRVVYFPQGH SDQVAATTNK QVDAHIPNYP NLPPQLICQL HNVTMHADVE TDEVYAQMTL  420
QPLTPQEQKE TFLPMELGLP SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS  480
LQPPAQELIA RDLHDVEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWYIFR  540
LSFPVTSLYA CGKESRYLFP CNAFTTPSAY MFMISRASPS EFVIPLSKYI KAVFHTRVSV  600
GMRFRMLFET EESSVRRYMG TITGISDLDP VRWPNSHWRS VKVGWDESTS GGSGIGRFRK  660
HDPADNSTQR DNKPDPRAVE HCTQKDTLSK TALLNSVFHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-12533564745372Auxin response factor 5
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1479152e-76EF147915.1 Populus trichocarpa clone WS0125_O23 unknown mRNA.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1392445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.21e-179auxin response factor 8