PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000295440

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 454aa MW: 49864.3 Da PI: 6.441

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000295440	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.7	6.5e-06	344	382	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L MDP0000295440 344 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 382 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.894	333	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-12	343	399	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-9	343	402	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.26E-7	343	386	No hit	No description
SMART	SM00353	0.0036	344	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MADEFQTPGN WWDSSSRTRF ETGASPPSSS LNSLGSFGWQ PXMVDIKARS SMDSGSVSGT 60 SSMVFHDTHK LQEGSDSASG GDPNLHMMAL GLSSXATDWN QALFRGEKAE TSFRSILQEN 120 MNSSTANFQQ ESDQQLQWRD KLFAGGCGDS SNEFKQMNRG FSLDQTQFSP QYSSGESTVT 180 CQGLPSSFQM DSASAALYGS PSTILQGXLG PHHDNQPQQP NSATINFPYQ GNYGINNSSE 240 LLPSWSKVPQ FVRTSPPKQP PHSHLQFSNN APFWNAPHEA AMKDVRPSFF PSLQPQFPTA 300 RFDEKPKNIS EVQESGAVGK KSGSEVVSKR PRNETSSPLP AFKVRKEKMG DRITALQQLV 360 SPFGKTDTAS VLSEAIEYIK FLHEQVNVLS TPYMKSGTAI QHQQQMSDKS KDPDGPKQDL 420 SSRGLCLVPV SSTFPVTHET TVDFWTPTFG GTYR

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MADEFQTPGN WWDSSSRTRF ETGASPPSSS LNSLGSFGWQ PXMVDIKARS SMDSGSVSGT  60
SSMVFHDTHK LQEGSDSASG GDPNLHMMAL GLSSXATDWN QALFRGEKAE TSFRSILQEN  120
MNSSTANFQQ ESDQQLQWRD KLFAGGCGDS SNEFKQMNRG FSLDQTQFSP QYSSGESTVT  180
CQGLPSSFQM DSASAALYGS PSTILQGXLG PHHDNQPQQP NSATINFPYQ GNYGINNSSE  240
LLPSWSKVPQ FVRTSPPKQP PHSHLQFSNN APFWNAPHEA AMKDVRPSFF PSLQPQFPTA  300
RFDEKPKNIS EVQESGAVGK KSGSEVVSKR PRNETSSPLP AFKVRKEKMG DRITALQQLV  360
SPFGKTDTAS VLSEAIEYIK FLHEQVNVLS TPYMKSGTAI QHQQQMSDKS KDPDGPKQDL  420
SSRGLCLVPV SSTFPVTHET TVDFWTPTFG GTYR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008366231.2	0.0	transcription factor bHLH123-like isoform X1
Swissprot	Q8GXT3	5e-90	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A498K8C9	0.0	A0A498K8C9_MALDO; Uncharacterized protein
STRING	XP_008366231.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1118	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	1e-83	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000295440

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]