PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000295480

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

CAMTA

Protein Properties

Length: 237aa MW: 26812.9 Da PI: 6.9195

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000295480	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	100.8	1e-31	26	102	3	78
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggv 78 +e k+rwl+++ei+aiL n++ ++++ ++ + pksg+++L++rk++r+frkDG++wkkkk gktv+E+he+LKv+g MDP0000295480 26 EEaKSRWLRPNEIHAILYNHKYFTIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKXGKTVKEAHEHLKVQGS 102 4559***********************************************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	43.555	21	164	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	7.0E-35	24	129	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	7.3E-27	27	104	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MENQLVGSEI HGFHTMQDLD VPTIMEEAKS RWLRPNEIHA ILYNHKYFTI HVKPVNLPKS 60 GTIVLFDRKM LRNFRKDGHN WKKKKXGKTV KEAHEHLKVQ GSPVTPVNSN SSSVSDPSAP 120 WFLSEELDSG ANNAYCAGEN ELPELGDRLT VNNHEQRLHD INTLEWEELL VTNDSKERLR 180 GLKVAPAEVS ADQNPESDTE EDSTGPAGNK LKSVLKDLLY VFRPCSAQRK HNKNIVG

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028951238.1	2e-95	calmodulin-binding transcription activator 5 isoform X1
Swissprot	O23463	7e-58	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A498HK70	1e-93	A0A498HK70_MALDO; Uncharacterized protein
STRING	XP_008368335.1	1e-93	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF34891	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16940.1	1e-51	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	MDP0000295480

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]