PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000295594
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 260aa    MW: 29794.4 Da    PI: 7.5009
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000295594genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92.1e-174792148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+++++E+e ++++++  G++ W++Ia++++ gRt++++k++w++++
    MDP0000295594 47 RGNFSKDEEETILELHQAIGNR-WSAIAARLP-GRTDNEIKNHWNTHM 92
                     89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.623141IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.0E-112752IPR009057Homeodomain-like
SuperFamilySSF466892.05E-232798IPR009057Homeodomain-like
PROSITE profilePS5129424.2524296IPR017930Myb domain
SMARTSM007173.0E-164694IPR001005SANT/Myb domain
PfamPF002496.2E-164791IPR001005SANT/Myb domain
CDDcd001678.58E-114992No hitNo description
Gene3DG3DSA:1.10.10.601.5E-225395IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MLLLYGRKVA DSSRGNSLFT KLKQSLARSG KSCRLRWVNY LRPDIKRGNF SKDEEETILE  60
LHQAIGNRWS AIAARLPGRT DNEIKNHWNT HMKKRFEXAI ESVHEEAKGF GDKEASKNKL  120
SETEQLFLVD EATRASSSKM ETTSSTSASS RLFCPXWEFX DXKGQIAEQS ICASGVTFGD  180
LQSLDSPVWQ QEPIFPCDSY INHATSDYWY CHCHPSSPPC FEGRHFEERA RQSQAKYPIT  240
PFTVEVPIFQ FIFQSQTIYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-21159726109B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.159910.0stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0744690.0DQ074469.1 Malus x domestica MYB21 mRNA, complete cds.
GenBankKC6912480.0KC691248.1 Malus x domestica MYB transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009373022.11e-126PREDICTED: myb-related protein Myb4-like
TrEMBLA0A498JUZ81e-115A0A498JUZ8_MALDO; Uncharacterized protein
STRINGXP_008371250.11e-131(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.17e-37myb domain protein 41